Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11296 ATGGATAATTCATCCAACTTTGATGAAAACTCTGATGTGGGTTATCAGCCTTCACCTTCTTCTGTGGATCAAAATGATCATTCAATCACTGAAACAGCTGTATACTCTCCATTCAGTGGTGATTCCTTCACATATTGCCGCAGTAACTCAGAGGTTTCAAACTTATCTGAGCCTATTGATGACAATAGCTATGCTAGTGAACCTTCACCTTCTCCATGGACATCTGTGAAACATGGACCAGTTCTTTCCAGGTTAGGAATGAAGCAGCCAAGGCATTCATTGGATGATAAATCTGATGATCTTGATCTCTTGGAAACAGAACTTGATATGATGAAGGAAAGATTTGCAAAACTTCTATTGGGGGAAGACATGTCTGGTGGTGGGAAAGGTGTCTGCACTGCAGTTACAATATCAAATTCCATTACCAATCTCTATGCAACTGTATTTGGACAGAATTTAAAGTTGGAGCCTTTGAAGCCTGAGAAGAAGGCTATGTGGAAAAGAGAAATGAATTGCCTTCTTTCTGTGTGTGAATACATAGTAGAATTTGCCCCAACTGCACAATATTTAGAAGATGGCACAATTGTGGAGATGATGACAAGTAGGCCAAGATCAGATATTTATATCAACCTCCCAGCTTTGCAAAAGCTTGACACAATGCTCATAGAAATATTAGATAGTTTCCAGGATACTGAATTTTGGTATGCAGAGCAAGGAAGCATATCAGGGAATTCAACTCGATCACGTGCAGGCTCATTTCGAAGGATTGTTCAGAGGAAAGATGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCACCCTGGTGGCCTCTCTGATAAGTCAAGGAAGCACTTGTGTGAGAAAAGAGACTGTGCTAATCAAATTCATAAAGCAGCCATGGCAATAAATAGTAGTGTTCTTGCGGAGATGGATATCCCAGAAACATACATAGCAAATCTTCCCAAGAGTGGAAGAGCAAGTCTGGGGGACACAATTTACCGCTATATGCATTCTGCAGACAAGTTCTCACCTGACTACCTTCTTGACTGTCTCAAAATAAGTACTGAACATGAAGCACTTGAGCTTGCAGATAGGGTTGAATCTTCAATGTACACATGGAGACGTAAATCTTGTCTGAGTCATTCAAAATCATCATGGAACAAGGTGAAGGATCTCATGGCTGATACAGACAGAAGTGACAAAAACTACATCTTAGCTGAGAGAGCTGAGACTTTATTGTTTTGCTTGAAGCAAAGATATCCTGAACTCTCACAGACATCCTTGGACACATGCAAGATTCAATACAACCGGGATGTAGGGAAAGCAATACTCGAGAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTTGCTTGGACTGAAGATGTTCTTTTTGCTGATAAATCAATGAGGAACCAATAA 1425 0.4042 MDNSSNFDENSDVGYQPSPSSVDQNDHSITETAVYSPFSGDSFTYCRSNSEVSNLSEPIDDNSYASEPSPSPWTSVKHGPVLSRLGMKQPRHSLDDKSDDLDLLETELDMMKERFAKLLLGEDMSGGGKGVCTAVTISNSITNLYATVFGQNLKLEPLKPEKKAMWKREMNCLLSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYINLPALQKLDTMLIEILDSFQDTEFWYAEQGSISGNSTRSRAGSFRRIVQRKDEKWWLPVPCVHPGGLSDKSRKHLCEKRDCANQIHKAAMAINSSVLAEMDIPETYIANLPKSGRASLGDTIYRYMHSADKFSPDYLLDCLKISTEHEALELADRVESSMYTWRRKSCLSHSKSSWNKVKDLMADTDRSDKNYILAERAETLLFCLKQRYPELSQTSLDTCKIQYNRDVGKAILESYSRVLEGLAFNIVAWTEDVLFADKSMRNQ. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11296 474 MobiDBLite consensus disorder prediction 54 78 - -
Seca4g11296 474 FunFam Rop guanine nucleotide exchange factor 14 343 474 - -
Seca4g11296 474 Coils Coil 94 114 - -
Seca4g11296 474 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 47 473 IPR038937 GO:0005085
Seca4g11296 474 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 107 472 IPR005512 GO:0005085
Seca4g11296 474 Gene3D PRONE domain, subdomain 1 343 474 - -
Seca4g11296 474 Gene3D PRONE domain, subdomain 1 101 342 - -
Seca4g11296 474 MobiDBLite consensus disorder prediction 54 73 - -
Seca4g11296 474 ProSiteProfiles PRONE domain profile. 98 474 IPR005512 GO:0005085
Seca4g11296 474 MobiDBLite consensus disorder prediction 1 40 - -
Seca4g11296 474 FunFam Rop guanine nucleotide exchange factor 14 100 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11296 Seca-Chr4 251520218 251523091 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11296 - - gmx:100785956 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11296 4 251520218 251523091 Seca4g11296 4 251520218 251523091 ECH
Seca4g11296 4 251520218 251523091 Seca2g00992 2 15920951 15924553 PCT