Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11289 ATGGACAAGGAGGAAGTGTTTGAGTTTCTCGGATGCGTTCCTATTCTACAGAGGCTTCCTAGCTCGTCTGTAAGGAAGATATCTCAGTTTGCAATTGCCAAACACTATGAGCCAGGAGAGTATGTTGCTCGTGAGGGTGAAGCAGGGGATGGTGTTTACTTCATATGGGATGGAGAGGCTGAAGTTGTTGGATCTGTTAGTGACAATGATGAAAATCGTCCAGAGTTCCAATTGAAAAGATATGACTACTTTGGTCATGGTTTGTCAAATACCGTTCACCAAGCAGATGTTGTTGCTTTGTGTAAGCTGACATGCTTAGTGCTGCCCCATGAGCACTCAACACTGCTACAGCCAAAGTCTATCTGGAGTGCAGAGAAGTTTCTTGAGAGATGCGCACCTGTGGAGAATATATTGCATTTGGAACCGATAGAGGTAGATATCTTCCAAGGAATCACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGACAGATGATTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTTTCTTAAGGTTGTCCATAGTTTGCATGCTTATTTTCTTCTTGCGGGGGATTTAAACATGCCTATTATATATCAAGTTAATCGTCTCCGTGATGGAAAAAGCTTTGCTACACGGAAAGTGGATGCATTTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCATAAAGAAGAATCAGGGTTTGACCACCAGGAAGTAACTATGCCATCTGTCCCTGCTCCAGATATGGCAAGATATAAGCTTCTGCCAATGGAAGAGCTAAGAGAGAGACGTCTTACTGACCCTCGCTTTCCAATAACTTACCGGAACAAAGTGGCGACAACTCAATTCTTCCCTTGGCCCATAGAGATACGGTTCTGTGAACCTAGAATTGCAACAAATCAGACAAGATCTCCTCCCAGTGTATGTAGTTTGAGATACTGGTTTAGAGCAAAAGGAAAACTTTCAGATGATCAGGCCTTGCATAGGTGCGTGGTGGCATATGCTTCAGATCTAATATTTCTTCAAGTAAGTTTGAATCCCCACCGTGGAAAGGATTTCAAGGCACGTGGTGTTAGTCTGGACCACTCGATGTGGTTTCACCGACCCTTAAAAGCTGATGACTGGGTCCTATTTGCGATCTTTACTCCTAGTGCCTATAAAGCACGTTCCTGTGTCACAGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGTCTAACCAGGAAAATTAATCCCGAAAATTCAGCCATTAAATCTAAGATGTGA 1311 0.4333 MDKEEVFEFLGCVPILQRLPSSSVRKISQFAIAKHYEPGEYVAREGEAGDGVYFIWDGEAEVVGSVSDNDENRPEFQLKRYDYFGHGLSNTVHQADVVALCKLTCLVLPHEHSTLLQPKSIWSAEKFLERCAPVENILHLEPIEVDIFQGITLPDAPRFGKVFGGQMIGQALAAASKSVDFLKVVHSLHAYFLLAGDLNMPIIYQVNRLRDGKSFATRKVDAFQKGNVIFTLLASFHKEESGFDHQEVTMPSVPAPDMARYKLLPMEELRERRLTDPRFPITYRNKVATTQFFPWPIEIRFCEPRIATNQTRSPPSVCSLRYWFRAKGKLSDDQALHRCVVAYASDLIFLQVSLNPHRGKDFKARGVSLDHSMWFHRPLKADDWVLFAIFTPSAYKARSCVTGQMFNQKGELLVSLVQEGLTRKINPENSAIKSKM. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11289 436 Pfam Cyclic nucleotide-binding domain 34 111 IPR000595 -
Seca4g11289 436 Gene3D Jelly Rolls 2 130 IPR014710 -
Seca4g11289 436 CDD CAP_ED 15 112 IPR000595 -
Seca4g11289 436 Gene3D - 131 425 IPR042171 -
Seca4g11289 436 FunFam Acyl-CoA thioesterase II 129 426 - -
Seca4g11289 436 CDD Thioesterase_II_repeat2 146 238 - -
Seca4g11289 436 Pfam Thioesterase-like superfamily 161 421 - -
Seca4g11289 436 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 133 242 IPR029069 -
Seca4g11289 436 ProSiteProfiles cAMP/cGMP binding motif profile. 15 85 IPR000595 -
Seca4g11289 436 PANTHER ACYL-COA THIOESTERASE 114 424 IPR003703 GO:0006637|GO:0047617
Seca4g11289 436 FunFam Acyl-CoA thioesterase II 1 124 - -
Seca4g11289 436 SMART cnmp_10 15 132 IPR000595 -
Seca4g11289 436 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 248 424 IPR029069 -
Seca4g11289 436 CDD Thioesterase_II_repeat1 320 421 - -
Seca4g11289 436 SUPERFAMILY cAMP-binding domain-like 4 112 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11289 Seca-Chr4 251397611 251406916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11289 1 436 Acyl Lipid Metabolism Gene Families AT1G01710 63.991 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11289 K01068 - gmx:100803260 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11289 4 251397611 251406916 Seca4g11289 4 251397611 251406916 ECH
Seca4g11289 4 251397611 251406916 Seca2g00997 2 16020391 16026928 PCT