Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00997 ATGAGAGATATTACCTTAAGTCCGTTCATAACTATAATTACAGAGACTAATGCGCAACTTGCAGGTTTATCAAATGCGGTTCACCACCATGCTGATGTTATAGCTTTGACTAAGCTATCATGCTTAGTACTGCCTCATGAGCACTCAGCACTGCTGCAGCCCAAGTCTATATGGAGTGCAGAAAAGTCTCATGAGACATGCTCACTTGTGGAGCATATATTGCATTTGGAACCCATAGAGGTAGATATCTTCCGAGGAATCACCCCTCAAGATGCTCCAAAATTTGGGAAGGTGTTTGGGGGACAGATAGTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTAAAAGTTGTTCATAGCTTGCATGCCTATTTTCTTCTTGTGGGGGATTTTAACATACCAATTATATATCAAGTTTACCGTCTCCGTGATGGGAAGAGCTTTGCTACAAGGAAAGTGGATGCAATTCAAAAGGGAAATATAATATTCACATTGCTGGCTTCATTTCAGAAAGAAGAATTAGGGTTTGACCATCAGGAAGTGTCTATCCCATCTGTCCCTGCTCCAGATAAGCTTTTATCTTTGGAAGAGCTGAGGGAGCAACGTCTCATTGACCCTCGTCTCCCAAGAACATACCGGAACAAAGTTGCTAAAGCTGAATTCATTCCCTGGCCCATAGAGATACGGTTCTGTGAACCTAAAGCTTCGACAAATCAGACCAAGTCTCCTCCTAGTTTGAGATACTGGTTTAGAGCAAAGGGAAAACTGTCAGATGATCAGGCCTTGCATAGGTGTGTGGTGGCATATGCTTCAGATCTAATATTTCTTCAAGTAAGTTTGAATCCCCACCGTCGGAAGGGCTTGAAGGCACGTGCTGTGAGTGTGGACCACTCCATGTGGTTTCACAGACCTCTAAGAGCTGATGACTGGGTGCTATTTGTGATCTTTAGTCCTAATGCCTCTAATGCACGCGGCTATGTCTCAGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGTCTAATGAGGAAGGTTAATTCCGAAAATTCAGCCATCAAATCTAAGTTGTGA 1098 0.4326 MRDITLSPFITIITETNAQLAGLSNAVHHHADVIALTKLSCLVLPHEHSALLQPKSIWSAEKSHETCSLVEHILHLEPIEVDIFRGITPQDAPKFGKVFGGQIVGQALAAASKSVDCLKVVHSLHAYFLLVGDFNIPIIYQVYRLRDGKSFATRKVDAIQKGNIIFTLLASFQKEELGFDHQEVSIPSVPAPDKLLSLEELREQRLIDPRLPRTYRNKVAKAEFIPWPIEIRFCEPKASTNQTKSPPSLRYWFRAKGKLSDDQALHRCVVAYASDLIFLQVSLNPHRRKGLKARAVSVDHSMWFHRPLRADDWVLFVIFSPNASNARGYVSGQMFNQKGELLVSLVQEGLMRKVNSENSAIKSKL. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00997 365 NCBIfam acyl-CoA thioesterase II 74 352 IPR003703 GO:0006637|GO:0047617
Seca2g00997 365 CDD Thioesterase_II_repeat1 249 351 - -
Seca2g00997 365 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 184 353 IPR029069 -
Seca2g00997 365 PANTHER ACYL-COA THIOESTERASE 55 356 IPR003703 GO:0006637|GO:0047617
Seca2g00997 365 Pfam Thioesterase-like superfamily 97 351 - -
Seca2g00997 365 Gene3D - 64 354 IPR042171 -
Seca2g00997 365 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 69 176 IPR029069 -
Seca2g00997 365 CDD Thioesterase_II_repeat2 82 174 - -
Seca2g00997 365 FunFam Acyl-CoA thioesterase II 65 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00997 Seca-Chr2 16020391 16026928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00997 22 365 Acyl Lipid Metabolism Gene Families AT1G01710 70.058 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00997 K01068 - gmx:100805018 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00997 2 16020391 16026928 Seca2g00997 2 16020391 16026928 ECH
Seca4g11289 4 251397611 251406916 Seca2g00997 2 16020391 16026928 PCT