Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11239 ATGGGTATGGCAGATGCAAAAGAAAGGTATGCTGTTGTTACAGGTGCAAACAAAGGGATTGGATTGGAGACTGTTAAAGAGTTGGCCTCAAATGGAGTCAAGGTGGTTCTCACAGCCAGAGATGAGAAGAGGGGGCTTCAAGCTGTTGAGAAATTGAAAGGGTGTGGTTTCTCTGACCTTGTGGTTTTTCACCAGCTTGATGTGACTGACCCTGCTAGTATTGCATCCTTAGTTGAGTTTGTTAAGAACCAGTTTGGGAGACTTGATATCTTGGTGAACAATGCAGGAATCAGTGGTTTTAATACAGATAGAATGGTGTTACCAATAAACTGGAAGGCACTGACTCAAGCTTATGACATGGCTGAAAAATGCCTAATAACAAATTACTATGGTGCTAAGGAAACAACTGAGGCTTTTCTTCCCCTTCTTCAGTTATCTAATTCACCTACAATTGTTAATGTTTCATCAGAAGCAGGGCTATTAAAGTACATATCAAACGAATGGGCTAAGAGGGTGTTGGATGATACTGAAAATCTCACAGAAGAGCTAATAGATGAGGTACTAAAGGAGTATTTGAAAGACTTAAAACAAGGGTCACTAGAACATAAGGGCTGGCCAACCTTCTTGTCTTCCTATATGGTCTCAAAAGCAGCCTTGAATTCCTACACAAGGCTTGTAGCTTATAAGCACCCAAATTTGTGCATTAATTGTGTATGCCCTGGTTTTGTTAAAACAGACATAAATAGAAACACAGGCAGCTTATCTGTAGAAAATGCTGCTGCTAGTGTTGTGAGATTAGCATTGTTGCCCAATGGTTCTCCTTCTGGTTACTTTTTTGCTAACCAAGATGTGTCAAGCTTTTGA 864 0.4028 MGMADAKERYAVVTGANKGIGLETVKELASNGVKVVLTARDEKRGLQAVEKLKGCGFSDLVVFHQLDVTDPASIASLVEFVKNQFGRLDILVNNAGISGFNTDRMVLPINWKALTQAYDMAEKCLITNYYGAKETTEAFLPLLQLSNSPTIVNVSSEAGLLKYISNEWAKRVLDDTENLTEELIDEVLKEYLKDLKQGSLEHKGWPTFLSSYMVSKAALNSYTRLVAYKHPNLCINCVCPGFVKTDINRNTGSLSVENAAASVVRLALLPNGSPSGYFFANQDVSSF. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11239 287 Pfam short chain dehydrogenase 10 164 IPR002347 -
Seca4g11239 287 FunFam (+)-neomenthol dehydrogenase 4 287 - -
Seca4g11239 287 Gene3D - 3 287 - -
Seca4g11239 287 CDD carb_red_PTCR-like_SDR_c 9 287 IPR045313 GO:0016616
Seca4g11239 287 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 270 IPR036291 -
Seca4g11239 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Seca4g11239 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 IPR002347 -
Seca4g11239 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 231 IPR002347 -
Seca4g11239 287 PRINTS Glucose/ribitol dehydrogenase family signature 212 231 IPR002347 -
Seca4g11239 287 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Seca4g11239 287 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Seca4g11239 287 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Seca4g11239 287 PRINTS Glucose/ribitol dehydrogenase family signature 86 97 IPR002347 -
Seca4g11239 287 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 9 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11239 Seca-Chr4 250944812 250947092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11239 11 248 Miscellaneous Gene Families AT2G29150 28.926 4.65e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11239 K15095 - gmx:111064653 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11239 4 250944812 250947092 Seca4g11239 4 250944812 250947092 ECH
Seca4g11238 4 250934438 250937338 Seca4g11239 4 250944812 250947092 PCT