Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11234 ATGCAGGATACTGGGTTTCCTTTGACTGAAAGGGATAGATTGGGGCTTCGGGGCCTCCTTCCTCCTCGTGTTATATCATTTGAGCAGCAATATGAGCGCTTTATGAATTCATACCGATCTTTGGAGAAGAATACTCAGGGACAACCAAATAAAGTTGTTTCCCTATCAAAATGGAGAATCTTAAATAGACTGCATGACAGGAATGAGACCTTGTACTACAGAGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACTCCTACAGTTGGATTAGTTTGTCAAAACTATTCAGGCTTATTTAGACGTCCACGCGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCATCAGGTAGACATGATTGTCTTGACAGATGGAAGTCGAATTCTTGGCTTAGGGGATCTTGGAGTTCAGGGAATTGGAATACCCATTGGAAAACTTGATGTGTATGTTGCTGCTGCTGGTATCAACCCACAAAGAATACTTCCAGTCATGCTAGATGTTGGCACCAACAATCAAAAGCTACTTGAAGACCGCCTCTATTTAGGACTTCGACAACCAAGGTTGGAAGGTGAAGAATATCTATCAATTGTGGATGAATTCATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTCGAAACCCTGGAACGATATCATAAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACTGCTGGTGTTGCACTTGCTGGATTATTGGGAACTGTAAGAGCCCAAGGTCGACCATTGTCTGATTTTGTGGACCAAAAGATAGTTGTGGTTGGAGCTGGGAGTGCAGGGCTTGGGGTTCTAAAAATGGCTGTCCAGGCAGTTGCAAAGATGTCTGGGTGCAGTGAAGTAGCTGCCAAAAGTCAATTCTTTCTGATTGATAAAGATGGTCTAGTCACGACGGAAAGGAACAATCTAGATCCAGCTGCAGCCCCATTTGCTAAAAATCCAAGAGACTTAGAGGGGCTTTCTGAGGGAGCTAGTATAATTGAAGTGGTTAAGAATGTTAAGCCACATGCGCTCCTTGGTTTGTCTGGCGTTGGTGGTATTTTCAATGAGGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAATCCCACCATGAATGCTGAGTGCACTGCTATTGATGCTTTTAGTCATGCTGGGGAAAATATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTGGATCTTGGTAATGGAAAAGTGGGCCATGTGAATCAAGCAAACAACATGTACCTTTTCCCAGGAATTGGTTTGGGAACTCTTGTGTCAGGTGCTCGTCTTATAACAGAAGGAATGCTGCAGGCAGCTGCTGAATGCCTCGCTTCATACATGGTTGAGGAAGATATCTTAAAAGGAATTCTCTATCCATCCATTGATAGCATACGGGATGTTACAGCAGAGGTTGGGGCTGCTGTACTTCGAGCAGCAGTTGAAGAAGATCTGGCAGAAGGACATGGTGATGTAGGGCCCAAAGAACTTGCACACATGTCAAAAGGAGAGACTGTGGAGTATGTCCGAAAAAATATGTGGTACCCTGTTTATTCTCCTCTTGTTCATGAAAAGTATGCAGTTGTGACTGGTGCTAACAAAGGAATTGGATTAGAGATAGTTAGGCAGTTAGCTTCAACTGGAATCAAGGTTCTGCTTACTGCAAGGGATGAGAAAAGGGGTCTTCAAGCATTGGAAACACTCAAAGCCTCAGGTCTATCTGACCTTGTTGTTTTTCATCAGCTAGATGTGGCTGATGCTGCAAGTGTAGCTTCTCTGGCTGATTTTGTCAAATCTGAATTTGGGAAACTTGATATTCTGGTTAATAATGCAGGGGTTGGTGGAGTCGAAATTAAAGACAGTGATTTATTCACTTTAATAATTGTTAAACGCGGGGCAATACCTGAAGATGACCTGAGAAAGGCAATGACTCAATCCTATGAGTCAGCTAAAGAATGCTTGCAAATAAATTATTATGGGGCTAAAAGAACAGCTGAATCCCTCCTTCCCATCCTCCACTTATCTGATTCACCAAGAATTGTCAATGTATCATCTGGAGTGGGGAAATTAGAGTTCTTACCAAATGAATGGGCTAAAGGAGTATTCAGAGATGTTGATAACCTCACAGATGAGAAAGTGGATGAAGTAGTTAAGGAGTTTCTCAAAGATTTCAAAGAAGGATCATTAGAAAGCAAAGGTTGGCCTAGGTATATGAGTGCTTATATTGTCTCCAAAGTTGCTATGAATGCCTATACAAGAATTCTTGCCAAGAAATACCCTGCCATCTGCATCAATTTTGTGACTGGAGCAAACAAAGGAATTGGATTAGAGATTGTTAAGCAGTTAGCTTCAACTGGAATCAAGGTGGTGCTAACAGCAAGAGATGACAAAAGGGGTCTTCAAGCACTGGAAACACTCAAAGCCTCAGGTTTATCTGACCTTGTTGTTTTTCATCAGCTGGATGTGACTGATGCTGAAAGTGTAGCTTCTCTGGCTGATTTTATCAAATCTGAATTTGGGAAACTTGATATTCTGGTTAACAATGCAGGGATTAATGGAGTTGTAATTAAAGACAGAGATTTATGCACTTCAGCTATTCTTAATCGTGGGCAGGCATTATCAGATGATGACGCGACAAAGGCAATGACTCAAACATATGAGTTAGCTGAAGAATGCTTGCAAATAAATTATTATGGTGCTAAAATAACTACCAAGTCCCTTCTGCCCCTCCTTCAGTTATCTGATTCACCAAGAATTGTGAATGTATCATCTACTATGGGGCAGTTAGAGAGTGTGCCAAATGAATGGGTTAAAGGAGTCTTGAGTGATGCTGAAAACCTTACAGAAGAGAAAGTGGATGAAGTATTGAAGAGGTTTCTTGAAGATTTCAAAGAAGGTTCATTAGAAAGCAAAGGCTGGCCTAAGACTCTGGGTGCCTATATTATGTCTAAAGCTGCTATGAATGCCTATACAAGAATTCTTGCTAAGAATTTCCCTACTTTCTGCATCAATAGTGTTTGCCCTGGTTATGTCAGGACAGATATAACTGCATATGCTGGCTTCTTAACAGTTGAAGAAGGTGCTGCTAGTCCTGTGAAGTATGCAGTTGTGACTGGTGCTAACAAAGGAATTGGATTAGAGATAGTTAGGCAGTTAGCTTCAGCTGGAATCAAGGTGGTGCTTACTGCAAGAGATGAGAAAAGGGGTCTTCAAGCATTGCAATCACTCAAAGCCTCAGGTCTATCTGACCTTGTTGTTTTTCATCAGTTAGATGTGGCTGATGCAGCAAGTGTAGCTTCTCTAGCTGATTTTGTCAAATCTGAATTTGGGAAACTTGATATTCTGGTTAACAATGCAGGGATTAGTGCAGTTGCAGTTAAAAACATTGATTTATTCAGTTCAGCTATCATTAATCGTGGGGCATTATCAGAAGATGACAGAAGAAAGGCAATAACTCAAACATATGAGTCAGCTAAAGAATGCAGTCAAATAAATTATTATGGTGCTAAAATAACTACCGAATCCCTTCTTCCCCTCCTCCACTTATCTGATTCACCAAGAATTGTGAATGTATCATCCACCCTGGGGCAGTTAGAGAGTATGCCAAATGGATGGGCTAAAGGAATCTTTAGTGATGCTGAAAACCTTACAGAAGAGAAAGTGGATGAAGTATTGAAGAAGTTTCTGGAAGATTTCCAAGAAGGTTCATTAGAAAACAAAGGCTGGCCTATGACTTTTAGTGCCTATATTGTGACTAAAGCTGCTATGAATGCCTATACAAGAATTCTTGCCAAGAATTTCCCTACTTTCTGTATCAATAGTGTTTGCCCTGGTTATGTCAAGACAGATATAACTGTAAATACAGGCTTCTTAACAGTTGAAGAAGGCGCTGCTAGTCCTGTGAAGTTAGCACTGCTTCCCAATGGTAGTCCATCTGGCCTCTTCTATTTCAGGAGTGAAGTGTCTCCCTTTTGA 4086 0.4099 MQDTGFPLTERDRLGLRGLLPPRVISFEQQYERFMNSYRSLEKNTQGQPNKVVSLSKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYHKRFCMFNDDIQGTAGVALAGLLGTVRAQGRPLSDFVDQKIVVVGAGSAGLGVLKMAVQAVAKMSGCSEVAAKSQFFLIDKDGLVTTERNNLDPAAAPFAKNPRDLEGLSEGASIIEVVKNVKPHALLGLSGVGGIFNEEVLKAMRESVSTKPAIFAMSNPTMNAECTAIDAFSHAGENIVFASGSPFENVDLGNGKVGHVNQANNMYLFPGIGLGTLVSGARLITEGMLQAAAECLASYMVEEDILKGILYPSIDSIRDVTAEVGAAVLRAAVEEDLAEGHGDVGPKELAHMSKGETVEYVRKNMWYPVYSPLVHEKYAVVTGANKGIGLEIVRQLASTGIKVLLTARDEKRGLQALETLKASGLSDLVVFHQLDVADAASVASLADFVKSEFGKLDILVNNAGVGGVEIKDSDLFTLIIVKRGAIPEDDLRKAMTQSYESAKECLQINYYGAKRTAESLLPILHLSDSPRIVNVSSGVGKLEFLPNEWAKGVFRDVDNLTDEKVDEVVKEFLKDFKEGSLESKGWPRYMSAYIVSKVAMNAYTRILAKKYPAICINFVTGANKGIGLEIVKQLASTGIKVVLTARDDKRGLQALETLKASGLSDLVVFHQLDVTDAESVASLADFIKSEFGKLDILVNNAGINGVVIKDRDLCTSAILNRGQALSDDDATKAMTQTYELAEECLQINYYGAKITTKSLLPLLQLSDSPRIVNVSSTMGQLESVPNEWVKGVLSDAENLTEEKVDEVLKRFLEDFKEGSLESKGWPKTLGAYIMSKAAMNAYTRILAKNFPTFCINSVCPGYVRTDITAYAGFLTVEEGAASPVKYAVVTGANKGIGLEIVRQLASAGIKVVLTARDEKRGLQALQSLKASGLSDLVVFHQLDVADAASVASLADFVKSEFGKLDILVNNAGISAVAVKNIDLFSSAIINRGALSEDDRRKAITQTYESAKECSQINYYGAKITTESLLPLLHLSDSPRIVNVSSTLGQLESMPNGWAKGIFSDAENLTEEKVDEVLKKFLEDFQEGSLENKGWPMTFSAYIVTKAAMNAYTRILAKNFPTFCINSVCPGYVKTDITVNTGFLTVEEGAASPVKLALLPNGSPSGLFYFRSEVSPF. 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11234 1361 Gene3D - 566 803 - -
Seca4g11234 1361 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1070 1359 - -
Seca4g11234 1361 ProSitePatterns Malic enzymes signature. 251 267 IPR015884 GO:0004471
Seca4g11234 1361 SMART Malic_M_2 255 518 IPR012302 GO:0051287
Seca4g11234 1361 CDD carb_red_PTCR-like_SDR_c 1070 1361 IPR045313 GO:0016616
Seca4g11234 1361 FunFam Malic enzyme 253 562 - -
Seca4g11234 1361 Coils Coil 24 44 - -
Seca4g11234 1361 PRINTS Malic enzyme signature 226 244 IPR001891 GO:0004470|GO:0004471
Seca4g11234 1361 PRINTS Malic enzyme signature 131 160 IPR001891 GO:0004470|GO:0004471
Seca4g11234 1361 PRINTS Malic enzyme signature 394 410 IPR001891 GO:0004470|GO:0004471
Seca4g11234 1361 PRINTS Malic enzyme signature 251 267 IPR001891 GO:0004470|GO:0004471
Seca4g11234 1361 PRINTS Malic enzyme signature 71 95 IPR001891 GO:0004470|GO:0004471
Seca4g11234 1361 PRINTS Malic enzyme signature 285 301 IPR001891 GO:0004470|GO:0004471
Seca4g11234 1361 PRINTS Malic enzyme signature 167 189 IPR001891 GO:0004470|GO:0004471
Seca4g11234 1361 CDD NAD_bind_1_malic_enz 255 553 - -
Seca4g11234 1361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 803 1067 IPR036291 -
Seca4g11234 1361 Gene3D - 1072 1361 - -
Seca4g11234 1361 Gene3D - 804 1071 - -
Seca4g11234 1361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 562 796 IPR036291 -
Seca4g11234 1361 FunFam (+)-neomenthol dehydrogenase 1069 1361 - -
Seca4g11234 1361 Pfam short chain dehydrogenase 803 966 IPR002347 -
Seca4g11234 1361 Pfam short chain dehydrogenase 562 727 IPR002347 -
Seca4g11234 1361 Pfam short chain dehydrogenase 1070 1235 IPR002347 -
Seca4g11234 1361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1070 1347 IPR036291 -
Seca4g11234 1361 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 3 254 IPR046346 -
Seca4g11234 1361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 255 560 IPR036291 -
Seca4g11234 1361 FunFam Malic enzyme 1 252 - -
Seca4g11234 1361 SMART malic_2 65 245 IPR012301 GO:0004471
Seca4g11234 1361 Gene3D - 1 252 IPR037062 GO:0004471
Seca4g11234 1361 Gene3D - 253 565 - -
Seca4g11234 1361 Pfam Malic enzyme, NAD binding domain 255 517 IPR012302 GO:0051287
Seca4g11234 1361 Pfam Malic enzyme, N-terminal domain 65 244 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11234 Seca-Chr4 250881331 250915147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11234 564 725 Miscellaneous Gene Families AT2G29150 34.969 1.71e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11234 K00028 - gmx:100806545 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11234 4 250881331 250915147 Seca4g11234 4 250881331 250915147 ECH
Seca4g11234 4 250881331 250915147 Seca2g01044 2 16867301 16874276 PCT