Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01044 ATGTGGAAGCTCGTGCGATTCGCCGCGTCCCGATCGCGGCGGTTCTCGACGGTGGCGATTCCCGGTCCATGTATGGTTCACAAGCGCGGTGCTGATATCCTCCATGATCCATGGTTCAACAAGGATACTGGGTTTCCTTTGACTGAAAGGGATCGTTTGGGGCTTCGGGGCCTCCTTCCTCCTCGTGTCATTTCATTTGAGCAGCAATATGATCGTTTTATGAATTCATATAGATCATTAGAGAAGAATACCAAGGACCAATCAGAAAAAGTTGTTTCCTTAGCCAAATGGAGGATCTTAAATAGACTGCATGACAGGAATGAGACCCTGTACTTCAGAGTTCTTATTGATAATATCAAAGAGTTTGCTCCAATAATCTATACTCCTACAGTTGGGTTAGTCTGTCAAAATTATTCAGGGTTATATAGACGCCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCGATGATCTATAACTGGCCAGCTAGTCAGGTAGACATGATTGTCTTGACAGATGGTAGTCGTGTTCTTGGCTTAGGCGACCTTGGAGTTCAGGGCATTGCAATTCCTATAGGAAAACTTGATATATATGTTGCTGCTGCTGGCATCAACCCACAAAGAATACTTCCAGTTATGTTAGATGTTGGCACAAACAATCAAAAGCTACTTCAAGATCGTCTTTATTTAGGAGTTCGACAACCTAGGTTGGAAGGTGAAGAGTATCTGTCGATTGTGGATGAATTCATGGAAGCTGTTTATGCTCGATGGCCTAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAACCGATATCGCAGAAGGTTTTGCATGTTTAATGATGATATACAGGGCACAGCTGGTGTTGCACTTGCTGGACTATTGGGAACTGTAAGAGCCCAAGGTCGACCATTGTCTGATTTTGTGAAACAAAAGATAGTTGTGGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTTAACATGGCTGTCGAGGCAGTTTCAAGGATGTCAGGGTGCAGTGAAACCGCTGCCAAAAGTCAATTCTTTTTAATTGATAAAGATGGTCTTGTCACGACTGAAAGGAGCAATCTAGATCCAGCTGCTGTTCCATTTGCTAAAAGCCCTAGAGATCTTGAAGGGCTTACAGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTCCTTGGATTGTCTGGGGTTGGTGGTATTTTTAATGAGGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAATCCCACTATGAATGCTGAGTGCACTGCTATTGATGCTTTTAAACATGCTGGAGAAAATATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTAGATCTTGGAAATGGAACAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTCCCTGGGATTGGTTTGGGAGCACTTCTGTCAGGTGCTCGTCATATAACAGATGGAATGTTGCAGGCAGCAGCTGAATGCCTTGCATCATACATGACAGAGGAAGAAACACAAAATGGAATCTTGTATCCATCCATTGATAGTATACGAGATGTTACAGCAGAGGTTGGAGCAGCTGTTCTACGTGCAGCAGTTGCAGAAGAGCTGGCTGAAGGACATGGTGATGTAGGCCCCAAAGAACTTGAGCACATGTCAGAAGAGGATACTGTGGAGTATGTCAGAGGCAATATGTGGTACCCTGAGTATTGTCCCCTTGTTCATGAAAAATAA 1806 0.4369 MWKLVRFAASRSRRFSTVAIPGPCMVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYDRFMNSYRSLEKNTKDQSEKVVSLAKWRILNRLHDRNETLYFRVLIDNIKEFAPIIYTPTVGLVCQNYSGLYRRPRGMYFSAKDKGEMMSMIYNWPASQVDMIVLTDGSRVLGLGDLGVQGIAIPIGKLDIYVAAAGINPQRILPVMLDVGTNNQKLLQDRLYLGVRQPRLEGEEYLSIVDEFMEAVYARWPKAIVQFEDFQMKWAFETLNRYRRRFCMFNDDIQGTAGVALAGLLGTVRAQGRPLSDFVKQKIVVVGAGSAGLGVLNMAVEAVSRMSGCSETAAKSQFFLIDKDGLVTTERSNLDPAAVPFAKSPRDLEGLTEGASIIEVVKKVKPHVLLGLSGVGGIFNEEVLKAMRESVSTKPAIFAMSNPTMNAECTAIDAFKHAGENIVFASGSPFENVDLGNGTVGHVNQANNMYLFPGIGLGALLSGARHITDGMLQAAAECLASYMTEEETQNGILYPSIDSIRDVTAEVGAAVLRAAVAEELAEGHGDVGPKELEHMSEEDTVEYVRGNMWYPEYCPLVHEK. 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01044 601 PRINTS Malic enzyme signature 110 134 IPR001891 GO:0004470|GO:0004471
Seca2g01044 601 PRINTS Malic enzyme signature 170 199 IPR001891 GO:0004470|GO:0004471
Seca2g01044 601 PRINTS Malic enzyme signature 324 340 IPR001891 GO:0004470|GO:0004471
Seca2g01044 601 PRINTS Malic enzyme signature 433 449 IPR001891 GO:0004470|GO:0004471
Seca2g01044 601 PRINTS Malic enzyme signature 290 306 IPR001891 GO:0004470|GO:0004471
Seca2g01044 601 PRINTS Malic enzyme signature 265 283 IPR001891 GO:0004470|GO:0004471
Seca2g01044 601 PRINTS Malic enzyme signature 206 228 IPR001891 GO:0004470|GO:0004471
Seca2g01044 601 Pfam Malic enzyme, N-terminal domain 104 284 IPR012301 GO:0004471
Seca2g01044 601 ProSitePatterns Malic enzymes signature. 290 306 IPR015884 GO:0004471
Seca2g01044 601 FunFam Malic enzyme 28 291 - -
Seca2g01044 601 PIRSF ME 6 600 IPR001891 GO:0004470|GO:0004471
Seca2g01044 601 CDD NAD_bind_1_malic_enz 294 592 - -
Seca2g01044 601 Gene3D - 28 291 IPR037062 GO:0004471
Seca2g01044 601 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 12 293 IPR046346 -
Seca2g01044 601 Pfam Malic enzyme, NAD binding domain 294 556 IPR012302 GO:0051287
Seca2g01044 601 Gene3D - 292 601 - -
Seca2g01044 601 FunFam Malic enzyme 292 601 - -
Seca2g01044 601 SMART Malic_M_2 294 557 IPR012302 GO:0051287
Seca2g01044 601 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 294 598 IPR036291 -
Seca2g01044 601 PANTHER MALIC ENZYME-RELATED 23 594 - -
Seca2g01044 601 SMART malic_2 104 284 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01044 Seca-Chr2 16867301 16874276 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01044 K00028 - gmx:100795823 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01044 2 16867301 16874276 Seca2g01044 2 16867301 16874276 ECH
Seca4g11234 4 250881331 250915147 Seca2g01044 2 16867301 16874276 PCT