Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11147 ATGGGTTTGATTTCTGGGATTATTATGGGGATGATATTTGGCATCGGATTGATGGCAGGATGGGAACGCATGATGAGGTACCGAAGCGCCAAGCGAATTAGAAAGGCTGCTGATATTAAACTTCTTGGATCACTTAACAGAGATGATATAAAGAAAATTTGTGGGGATAATTTTCCTGAGTGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGACCAAACTTTGGCCGTTTGTGGCAGAAGCAGCAACAATGGTGATCAGGGAATCTGTTGAACCTCTACTGGAAGATTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCAAAAATTGAAGGTATTCGTGTGCAGAGTCTTACCAAAGGTCAAATTATTATGGACATTGATTTCCGTTGGGGTGGTGATCCCAGTATCATTTTGGCTGTTGAAGCTGCACTTGTTGCATCTATCCCTATTCAGTTGAAGGATCTACAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATACCTTGTATTTCTGCTGTTGTTGTTGCTTTACTTGCAGAGCCAAAGCCCAAGATTGACTATACTCTGAAAGCTGTTGGTGGAAGTTTGACAGCAATTCCTGGAATTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGATATGCTCCAATGGCCTCACAGGATTGTCGTTCCACTTGGTGGTATACCCGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAAATCTTAAAGTGACTGTAGTGAAAGCAAATGATTTAAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTTTTGCATATTCGACCCTTATTTAAGGTTAAAACCAGGGTTATTGATAACAACTTGAATCCTGTTTGGGATCAGACATTTGAGTTGATTGCAGAAGACAAGGAGACTCAGTCACTTATTCTTGAGGTTTCAGCCTACTTATACTTTATCTCCTTTATGCTGTGTCTTCTGCCTCCTTCGTTAGGGGTTTTTGATGAAGACATTGGGCAAGATAAGCGTTTGGGAATAGCACAATTACCCCTTATTGACCTGGAAGCAGAAACTGAAAAAGAACTCGAATTGAGGCTTCTGTCATCACTTGATACACTGAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACAGTAAAGGTCTTGTATCATCAATTTAACAAGGAAGAACAGTTGGTTGCACTAGAAGCAGAGAAAAAGATACTAGAAGAAAGGAAGAAACTGAGAGAGGAGGGAATCATAGGAAGCACAATGGATGCACTAGATGGGGCAGTATCAGTGGTAGGATCTGGTGTTGGACTGGTTGGTACCGGCGTTGCTACCGGTGCTGGGCTTGTGGGGACTGGTGTTGTTGCTGGTGCTGGGCTTGTGGGGACTGGTGTCGGTGCCGGAGCTGGGCTTGTTGGCAGTGGCATTGGTGCTGGAGTTGGGATTGTTGGGAGTGGTCTTGGAGCCTTTGGCAGTGGACTGAGCAAGGCAGGAAAGTTCATGGGCAGGACAATCACAGGTCACAGTTCATCCAGAAAGAGTGGTTCATCTACTCCAGTCAATAATGCACAGGAGAGTGGTGGTGGTGCAAAGCCCCTGTAA 1668 0.4347 MGLISGIIMGMIFGIGLMAGWERMMRYRSAKRIRKAADIKLLGSLNRDDIKKICGDNFPEWISFPVYEQVKWLNKQLTKLWPFVAEAATMVIRESVEPLLEDYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLAEPKPKIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGNLKVTVVKANDLKNMEMIGKSDPYVVLHIRPLFKVKTRVIDNNLNPVWDQTFELIAEDKETQSLILEVSAYLYFISFMLCLLPPSLGVFDEDIGQDKRLGIAQLPLIDLEAETEKELELRLLSSLDTLKVKDKKDRGTLTVKVLYHQFNKEEQLVALEAEKKILEERKKLREEGIIGSTMDALDGAVSVVGSGVGLVGTGVATGAGLVGTGVVAGAGLVGTGVGAGAGLVGSGIGAGVGIVGSGLGAFGSGLSKAGKFMGRTITGHSSSRKSGSSTPVNNAQESGGGAKPL. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11147 555 Gene3D C2 domain 259 437 IPR035892 -
Seca4g11147 555 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Seca4g11147 555 CDD SMP_SYT 59 248 - -
Seca4g11147 555 Coils Coil 411 431 - -
Seca4g11147 555 MobiDBLite consensus disorder prediction 525 555 - -
Seca4g11147 555 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 411 IPR035892 -
Seca4g11147 555 ProSiteProfiles C2 domain profile. 247 383 IPR000008 -
Seca4g11147 555 MobiDBLite consensus disorder prediction 526 547 - -
Seca4g11147 555 CDD C2 266 379 - -
Seca4g11147 555 Pfam C2 domain 264 333 IPR000008 -
Seca4g11147 555 SMART C2_3c 265 382 IPR000008 -
Seca4g11147 555 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 435 IPR045050 GO:0008289
Seca4g11147 555 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11147 Seca-Chr4 249905801 249914250 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11147 - - gmx:100798484 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11147 4 249905801 249914250 Seca2g01137 2 18271044 18279489 PCT