Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01137 ATGGGTTTGTTTTCTGGGATTTTTATGGGGATAGCATTCGGCATAGCATTGATGGCTGCGTGGCAGCGCATGATGAGGTACCGAAGCGCCAAGCGAATTGCAAAGGCAGTTGACATTAAACTCCTTGGGTCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGAAAATTTTCCTGAATGGATATCTTTTCCAGTATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAACTCTGGCCATTTGTGGCAGATGCAGCAACATTGGTGATAAGAGAATCTGTTGAACCGCTATTAGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGTAAGCTGTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGTGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTATCTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCAGCATCATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGTTTTGTTTGTGCAAACCCTTTTGTGGGCTTCTGCAAATCAAGCTAAAAACGTTAGATGGACCATTGACTGGAAGTTGGCCGAAACCTAGAATTGATTACACTCTGAAGGCTGTTGGTGGAAGTTTGACGGCACTACCTGGAATTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTAGTTCCTCTGGGTGGTATTCCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAAGGCTTACAGTGACTGTAATAAAAGCAAATGACTTAAAGAATAAGGAGATGATTGGGAAGTCTGATCCTTATGTAGTTGTGCATATTCGACCACTGTTTAAGGTTAAAACGAAGGTTATTGATAACAACCTGAATCCTATCTGGAATGAGGTATTTGACTTGATTGCAGAAGACAAGGAGACCCAGTCACTCATCCTTGAGGTTTATGACAAAGACATTGGGCAAGATAAGCGACTGGGAATAGCAAAATTACCACTCATTGACCTGGAAGCAGAAACTGTGAAAGAGTTCGAATTGAGGCTGCTGTCATCGCTTGATACGCTGAAAGTGAAAGATAAGAAGGATCGAGGAACCTTGACAATAAAGGTCCTTTATCATCAATTTGACAAGGAAGAACAGTTGGCTGCACTAGAAGTAGAGAAAAAGATACTAGAAGAAAGGAAGAAACTGAAAGAGGAGGGAGTTATAGGAAGTACAATGGATGCCATAGATGGAGCAGCATCTTTAGTTGGGTCTGGTGTTGGACTTGTGGGAACTGGAATTGGTGCTGGTGCTGGACTTGTGGGAACTGGAATTGGTGCTGGTGCTGGGCTTGTTGGCAGTGGCATTGGTGCTGGAGTTGGTTTTGTTGGAAGTGGTCTTGGTGCTGTTGGTAGTGGACTCAGCAAAGCAGGAAAGTTTATGGGCAGGACAATCACAGGGCAAGGTGTATCCAGAAGGAGTGGTTCAACAACTCCTATCAATAATGTGGAGGAGAGTGGTGGTGGTGCAAAGCCTAGGTAG 1653 0.4319 MGLFSGIFMGIAFGIALMAAWQRMMRYRSAKRIAKAVDIKLLGSLNRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIILAVEAALVASIPIQLKDLQVFSIIRVIFQLAEEIPCISAVVVALLAEFCLCKPFCGLLQIKLKTLDGPLTGSWPKPRIDYTLKAVGGSLTALPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGRLTVTVIKANDLKNKEMIGKSDPYVVVHIRPLFKVKTKVIDNNLNPIWNEVFDLIAEDKETQSLILEVYDKDIGQDKRLGIAKLPLIDLEAETVKEFELRLLSSLDTLKVKDKKDRGTLTIKVLYHQFDKEEQLAALEVEKKILEERKKLKEEGVIGSTMDAIDGAASLVGSGVGLVGTGIGAGAGLVGTGIGAGAGLVGSGIGAGVGFVGSGLGAVGSGLSKAGKFMGRTITGQGVSRRSGSTTPINNVEESGGGAKPR. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01137 550 Pfam C2 domain 290 386 IPR000008 -
Seca2g01137 550 MobiDBLite consensus disorder prediction 524 550 - -
Seca2g01137 550 Coils Coil 417 444 - -
Seca2g01137 550 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 275 IPR031468 GO:0008289
Seca2g01137 550 FunFam synaptotagmin-4 isoform X1 285 443 - -
Seca2g01137 550 MobiDBLite consensus disorder prediction 524 541 - -
Seca2g01137 550 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 210 IPR039010 -
Seca2g01137 550 SMART C2_3c 291 388 IPR000008 -
Seca2g01137 550 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 290 417 IPR035892 -
Seca2g01137 550 CDD C2 292 386 - -
Seca2g01137 550 CDD SMP_SYT 59 274 - -
Seca2g01137 550 PRINTS C2 domain signature 307 319 IPR000008 -
Seca2g01137 550 PRINTS C2 domain signature 332 345 IPR000008 -
Seca2g01137 550 PRINTS C2 domain signature 354 362 IPR000008 -
Seca2g01137 550 ProSiteProfiles C2 domain profile. 273 391 IPR000008 -
Seca2g01137 550 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 461 IPR045050 GO:0008289
Seca2g01137 550 Gene3D C2 domain 285 444 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01137 Seca-Chr2 18271044 18279489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01137 292 382 Lipid Metabolism Gene Families AT4G00700 40.659 2.05e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01137 - - gmx:100785209 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01137 2 18271044 18279489 Seca2g01137 2 18271044 18279489 ECH
Seca4g11147 4 249905801 249914250 Seca2g01137 2 18271044 18279489 PCT