Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11110 ATGGCTTCTTCGGAAGCCGATTCCCGTCTGAGTCAGGTCGTCGTCCCCGCACTCGAGAAGATCATCAAGAATGCTTCGTGGCGAAAGCACGCGAGGCTCGCTCACGAGTGCAAATCTGTCATCGAGAGGCTCAATTCGCAGAACCAGCAGTTACAGCCAGGTTCGCCCTCCGATACCGAGCCGGAAAACTCGGCTCCCGGTCCGCTCCACGACGGCGGTCCGGTTGAGTACTCACTCGCTGAGTCCGAATCGATTCTCATTCCTCTCATCAATGCTGCTGGCTCCGGCGTCCTGAAGATCGCCGATCCCGCCGTCGATGCCATCCAGAAACTCATCGCGCATGGCTACCTCCGCGGTGAGGCGGATCCTGGAGGCACCGCTGGTGAGGCCAAGTTGCTTTCCAACCTAATCGAATCGGTTTGCAAATGCCACGATTTGGGCGACGACGCGATGGAATTGCTGGTGCTGAAGACGCTTTTGTCTGCGGTGACGTCGATTTCTCTACGAATTCACGGTGATTGTTTGCTTCTTATTGTGAGAACGTGTTACGATATATATCTCGTGAGTAAGAATGTGGTGAATCAGACGACGGCGAAGGCGTCGTTAATTCAGATGTTGGTGATTGTATTCAGGAGAATGGAAGCGGATTCTTCCACTGTGCCGATTCAGCCGATTGTGGTTGCTGAGTTGATGGAGCCTGTGGAAAAATCTGATGTGGATAATTCAATGACGCAGTTTGTGCAAGGGTTTATCACGAAGATAATGCAGGACATTGATGGAGTTTTGAACCCCGTGACGCCTAGTGGTAAGGTTTCTTTGTTAGGTGGGCATGATGGTGCGTTTGAGACCACCACGGTGGAGACCACGAACCCCACGGATTTGTTGGATTCCACTGATAAGGACATGTTGGATGCCAAGTATTGGGAGATCAGTATGTACAAGACGGCCTTGGAGGGAAGGAAGGGGGAGCTGGTGGATGGGGAGATTGTGGAGAGGGATGATGATTTGGAAGTTCAGATTGGAAACAAGTTGAGGAGGGATGCCTTCTTGGTGTTTAGGGCGCTTTGTAAATTATCCATGAAGACACCCCCTAAGGAGGCATCTGTGGATCCGCAGTTGATGAAGGGGAAGATTGTAGCTTTAGAGTTGTTGAAGATCTTGCTGGAGAACGCTGGAGCTGTCTTCAGGACTAGTGAAAGGTTTTTAGGTGCCATCAAGCAGTACTTATGTTTATCATTATTGAAGAACAGTGCTTCTACTCTTCTGATTGTTTTTCAGCTATCATGCTCCATCTTCATCAGTCTGGTATCAAGATTTAGGGCTGGATTGAAAGCAGAAATTGGAGTTTTTTTCCCTATGATTGTTCTCAGGGTCCTAGAAAATGTTTCTCAACCTAATTTTCAGCAGAAGGTGATTGTGCTTCGATTTCTAGAGAAGCTTTGTGTTGATTCGCAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAACATATTTGAGAGGATGGTCAATGGACTCCTCAAAACTGCTCAAGGTGTTCCTCCTGGTGTAACAACCACACTTTTGCCACCTCAAGAAGCAACACTAAAACTTGAAGCCATGAAAAGCTTGGTTGCTGTTTTAAAATCAATGGGAGACTGGATGAACAAACAGTTGCGGATTCCAGATCCTCATTCAGCCAAGAAAGTTGAGGTATCTGATAACGGTCCTGAAGCTGGAGGTTTCACCATGGTAAATGGGAATGGAGAAGACCCGGTTGAAGGATCTGATTCTCATTCTGAAATCTCTAATGATGCATCTGATGTTTCAACTATTGAGCAACGCCGGGCTTATAAACTGGAACTTCAGGAAGGTATATCACTTTTTAATAGGAAGCCTAAGAAAGGAATTGAGTTCCTCATCAATGCCAACAAGGTAGGTGATTCACCGGAGGATATAGCTGCTTTTCTTAAAGATGCATCTGAGTTGAACAAGACTTTGATTGGTGATTATCTGGGAGAAAGAGAAGAATTACCCTTGAAGGTAATGCATGCCTATGTGGAGTCCTTTAACTTTCAAGGAATGGAGTTTGATGAGGCAATCAGGGTCTTTCTTCAAGGATTTAGACTGCCTGGTGAGGCACAGAAAATTGATCGGATCATGGAAAAGTTTGCTGAACGTTATTGTAAATGTAATCCAAAGGCCTTTTCTAGTGCTGACACAGCATATGTTCTTGCTTATTCTGTGATACTACTCAATACAGATGCTCACAATCCTATGGTGAAGAACAAGATGTCTGCTGATGATTTCATAAGAAACAATCGTGGCATTGATGATGGAAAGGATCTGCCTGAGGAATACTTGAGGTCATTGTTTGAGAGAATATCTAGAAGTGAGATCAAAATGAAAGAAAATGATATAGCTCCCCAACAAAGACAGGCTGTGAACCCGAATAGACTTTTAGGCTTGGATAGTATATTGAATATTGTGATCCCTAAGCGTGGGGAAGACTATATGGAAACTAGCGATGATCTTATCCGTCATATGCAAGAACAATTCAAAGAAAAAGCTCGCAAAACTGAGTCAGTCTATTATGCAGCAACAGATGTTGTAATCCTCAGATTCATGATTGAGGTGTGTTGGGCACCAATGTTAGCTGCCTTTAGTGTACCTCTTGATCAAAGTGATGATGAGGTTGTAATATCTCTGTGCCTTGAAGGCTTCCGCTATGCTATTCATGTTACTTCTGTGATGTCCATGAAGACTCATAGAGATGCTTTTGTGACTTCATTAGCAAAGTTTACCTCACTGCATTCTCCTGCAGATATTAAGCAGAAAAATGTGGATGCAATTAAGGCAATAGTTGCTATTGCTGATGAGGATGGAAATTACTTACAAGAAGCATGGGAGCATATCTTGACTTGTGTTTCCCGGTTTGAGCATCTACATCTTCTTGGGGAGGGGGCTCCACCGGATGCTACATTCTTTGCCTTCCCTCAAAATGATTCAGAAAAAACCAAACAAGCAAAATCAACCATTCTCCCTGTTTTGAAGAAGAAGGGACCTGGGAGGATGCAGTATGCAGCTGCCACATTGATGCGGGGTTCATATGATAGTGCTGGAATTGGCGGTAATGCTTCAGGAGCAGTCACCTCGGAACAGGTGAACAATCTAGTTTCTAATTTGAATATGTTGGAACAAGTTGGAAGCTCTGAAATGAATCGCATATTCACTCGGAGTCAGAAGTTGAACAGTGAGGCCATAATCGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGATCTCCATCTGATCCACGGGTTTTCAGCCTTACAAAGATGGTTGAGATTGCGCACTATAATATGAACCGCATCAGGCTTGTGTGGTCAAGCATCTGGCATGTTCTCTCTGGTTTCTTTGTAACCATTGGCTGTTCTGCAAACCTTTCAATTGCAATTTTTGCGATGGATTCGTTACGTCAGTTGTCAATGAAATTTCTGGAGCGTGAAGAGTTGGCTAATTATAATTTTCAAAATGAATTTATGAAGCCTTTTGTCATTGTTATGCGAAAGAGTAATGCTGTTGAAATTAGAGAACTAATTATCAGATGTGTCTCTCAAATGGTTCTATCTCGCGTGAACAATGTCAAATCAGGGTGGAAGAGCATGTTCATGGTATTCACAACAGCTGCTTATGATGACCACAAAAACATTGTACTCCTGGCTTTTGAAATTATGGAGAAGATTATTCGAGATTACTTTCCATACATCACAGAGACTGAAACCACCACCTTCACAGACTGTGTGAATTGCCTAATTGCATTCACCAATAGTAGATTCAACAAAGAGATTAGCCTAAATGCCATTGCTTTTCTTCGATTTTGTGCAACAAAACTAGCAGAAGGAGACCTTGGCTCATCATCCAGGAATAAGGATAAGGAAGTTTCTGGAAAGATTTCCTCACCTTCACCTCGAAGAGGAAGAGAGGGCAAACAAGATAACGGACAGTTGACTGACAAGGATGATCATCTCTATTTCTGGTTTCCTTTATTGGCAGGTCTATCTGAGCTTAGCTTTGACCCGAGGCCTGAGATTAGGAAGAGTGCCTTGGAAGTCCTGTTTGAAACCTTACGCAACCACGGGCATCTCTTTTCATTACCTTTATGGGAAAGAGTATTTGAGTCTGTCCTCTTTCCAATATTTGATTATGTTCGACATGCTATTGATCCTGCAGGGAGTGGTTCACAGGTCAATGAAGTAGAGACAGATGGTGAGCTTGATCAAGATGCTTGGCTTTATGAGACATGCACACTGGCTCTCCAATTGGTTGTAGATCTTTTCGTCAACTTTTATAACACTGTCAATCCACTTTTAAAAAAGGTGCTGATGCTCCTGGTAAGCTTTATAAAGCGCCCTCATCAAAACCTTGCTGGCATTGGTATTGCTGCATTTGTTCGTTTGATGAGCAATGCTGGGGACCTATTTTCTGATGAGAAGTGGTTGGAAGTGGTTCTGTCACTTAAAGAAGCAGCAAATGCAACACTCCCTAACTTTTCATTCCTTGAAAGTGAGGACTTTGTGGCTAGAAATCATGAACATGCTTCAACAGCTGAAGATGATACAGATCTTGCTGAGTCCGGCTTCCCAGATAATTTAGAAAGCCTAAGGACTCGACGACTTTATGCTTATTTAAATGATGCAAAATGCCGAGCAGCTGTTCAGCTTTTATTGATTCAGGCGGTGATGGAGATCTATACCATGTATCGGTCTCACCTTTCAGCAAAAACAATCCTACTCCTGTTTGATGCTTTGCACGATGTAGCATTACATGCACACAAGATTAACAGCAATACTATATTGCGCTCTAAGCTTCAAGAGTTTGGTTCTATGACCCAAATGCAAGATCCTCCACTATTACGCCTTGAGAATGAGTCATATCAAATATGCCTTACATTTTTACAGAACCTTGTTGTCGACAAGCCTCATAGTTATGAGGAGGCTGAGGTTGAATCTCATCTTGTTGGACTTTGTGAAGAGGTTTTGGAGTTTTATATTGACGTTGCAGGCTTTGGACAAAAATCTGAATCTTATCATGGTAGAAAGCCACATTGGTTAATTCCTTTAGGCTCTGGGAAGCGGAGAGAATTAGCTGCACGTTCTCCTCTTGTTGTGGCTACTCTGCAGGCTATTTGTAGTTTGGGAGATATTTCTTTTGAGAAGAACCTGTCTCATTTTTTCCCCCTTCTCTCTAGCTTGGTAAGTTGTGAACATGGTTCAAAGGATGTCCAAGTTGCTCTCAGTGATATGCTTAGTCTATCAGTTGGTCCTGTTTTGCTACAGTCATGTTGA 5352 0.4318 MASSEADSRLSQVVVPALEKIIKNASWRKHARLAHECKSVIERLNSQNQQLQPGSPSDTEPENSAPGPLHDGGPVEYSLAESESILIPLINAAGSGVLKIADPAVDAIQKLIAHGYLRGEADPGGTAGEAKLLSNLIESVCKCHDLGDDAMELLVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIYLVSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPVEKSDVDNSMTQFVQGFITKIMQDIDGVLNPVTPSGKVSLLGGHDGAFETTTVETTNPTDLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGEIVERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEASVDPQLMKGKIVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASTLLIVFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVSQPNFQQKVIVLRFLEKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVTTTLLPPQEATLKLEAMKSLVAVLKSMGDWMNKQLRIPDPHSAKKVEVSDNGPEAGGFTMVNGNGEDPVEGSDSHSEISNDASDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGDSPEDIAAFLKDASELNKTLIGDYLGEREELPLKVMHAYVESFNFQGMEFDEAIRVFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVILLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRSEIKMKENDIAPQQRQAVNPNRLLGLDSILNIVIPKRGEDYMETSDDLIRHMQEQFKEKARKTESVYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEVVISLCLEGFRYAIHVTSVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNVDAIKAIVAIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNDSEKTKQAKSTILPVLKKKGPGRMQYAAATLMRGSYDSAGIGGNASGAVTSEQVNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKMVEIAHYNMNRIRLVWSSIWHVLSGFFVTIGCSANLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIMEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKEISLNAIAFLRFCATKLAEGDLGSSSRNKDKEVSGKISSPSPRRGREGKQDNGQLTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALEVLFETLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPAGSGSQVNEVETDGELDQDAWLYETCTLALQLVVDLFVNFYNTVNPLLKKVLMLLVSFIKRPHQNLAGIGIAAFVRLMSNAGDLFSDEKWLEVVLSLKEAANATLPNFSFLESEDFVARNHEHASTAEDDTDLAESGFPDNLESLRTRRLYAYLNDAKCRAAVQLLLIQAVMEIYTMYRSHLSAKTILLLFDALHDVALHAHKINSNTILRSKLQEFGSMTQMQDPPLLRLENESYQICLTFLQNLVVDKPHSYEEAEVESHLVGLCEEVLEFYIDVAGFGQKSESYHGRKPHWLIPLGSGKRRELAARSPLVVATLQAICSLGDISFEKNLSHFFPLLSSLVSCEHGSKDVQVALSDMLSLSVGPVLLQSC. 1784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11110 1783 SUPERFAMILY ARM repeat 380 1507 IPR016024 -
Seca4g11110 1783 MobiDBLite consensus disorder prediction 47 62 - -
Seca4g11110 1783 MobiDBLite consensus disorder prediction 1306 1338 - -
Seca4g11110 1783 SUPERFAMILY Sec7 domain 613 804 IPR035999 GO:0005085|GO:0032012
Seca4g11110 1783 ProSiteProfiles SEC7 domain profile. 609 796 IPR000904 GO:0005085|GO:0032012
Seca4g11110 1783 Pfam Sec7 domain 617 798 IPR000904 GO:0005085|GO:0032012
Seca4g11110 1783 MobiDBLite consensus disorder prediction 47 74 - -
Seca4g11110 1783 MobiDBLite consensus disorder prediction 1304 1338 - -
Seca4g11110 1783 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 691 809 - -
Seca4g11110 1783 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 599 689 - -
Seca4g11110 1783 Gene3D - 691 809 IPR023394 -
Seca4g11110 1783 SMART sec7_5 613 798 IPR000904 GO:0005085|GO:0032012
Seca4g11110 1783 MobiDBLite consensus disorder prediction 564 606 - -
Seca4g11110 1783 Pfam Domain of unknown function (DUF1981) 1166 1248 IPR015403 -
Seca4g11110 1783 Gene3D - 609 690 - -
Seca4g11110 1783 Pfam BIG2 C-terminal domain 1574 1772 IPR046455 -
Seca4g11110 1783 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 67 1648 - -
Seca4g11110 1783 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 216 IPR032629 -
Seca4g11110 1783 Pfam C-terminal region of Mon2 protein 1347 1410 IPR032817 -
Seca4g11110 1783 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 345 503 IPR032691 -
Seca4g11110 1783 CDD Sec7 616 798 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11110 Seca-Chr4 249440622 249451363 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11110 K18442 - gmx:100798955 3219.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11110 4 249440622 249451363 Seca4g11110 4 249440622 249451363 ECH
Seca4g11110 4 249440622 249451363 Seca2g01166 2 18858252 18870770 PCT