Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10913 ATGGGTAACCTCAAGTTAGCATCATGCATGGTTCTGATCATGTGCGTGGCTGTGGTACTGTCTGCACACACTGCCCGTGCCATCACATGTGGGCAGGTCTCAGGCAACCTAGCACCATGCCTACGTTATCTCCAGAAAGGTGGTCGTGTTCCTCCACCTTGCTGTGCCGGTGTTAAGAACATTGCTCGTGCAGCCAGGACCACCGCTGACCGCCGTGCCGCTTGCAAGTGCTTGAAGTCAGCTGCTGGTGCAATCCGCGGTATCGTCTCTTCATTTGCTGAGTCTCTTCCTCGCAATTGTGGAGTCAGTATCCCCTACAAGATCAGCACATCTACCAACTGTGCTAGGTTAGTAATTATTAATGTTTACATGCATGTCTTTGAAATTAATCTTTCCCATCATTTTAATGACAACTTGTCGATCATAACACTGAAATACCTTTAA 444 0.4797 MGNLKLASCMVLIMCVAVVLSAHTARAITCGQVSGNLAPCLRYLQKGGRVPPPCCAGVKNIARAARTTADRRAACKCLKSAAGAIRGIVSSFAESLPRNCGVSIPYKISTSTNCARLVIINVYMHVFEINLSHHFNDNLSIITLKYL. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10913 147 CDD nsLTP1 28 114 - -
Seca4g10913 147 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 116 IPR036312 -
Seca4g10913 147 ProSitePatterns Plant lipid transfer proteins signature. 96 117 IPR000528 GO:0006869|GO:0008289
Seca4g10913 147 Gene3D - 27 117 IPR036312 -
Seca4g10913 147 PRINTS Plant phospholipid transfer protein signature 49 63 IPR000528 GO:0006869|GO:0008289
Seca4g10913 147 PRINTS Plant phospholipid transfer protein signature 87 104 IPR000528 GO:0006869|GO:0008289
Seca4g10913 147 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Seca4g10913 147 PRINTS Plant phospholipid transfer protein signature 70 85 IPR000528 GO:0006869|GO:0008289
Seca4g10913 147 PRINTS Plant phospholipid transfer protein signature 105 116 IPR000528 GO:0006869|GO:0008289
Seca4g10913 147 SMART aai_6 30 114 IPR016140 -
Seca4g10913 147 FunFam Non-specific lipid-transfer protein 27 118 - -
Seca4g10913 147 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 9 115 IPR000528 GO:0006869|GO:0008289
Seca4g10913 147 Pfam Protease inhibitor/seed storage/LTP family 30 114 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10913 Seca-Chr4 246767501 246767944 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10913 4 117 Acyl Lipid Metabolism Gene Families AT5G59310 55.263 4.57e-36 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10913 - - lja:Lj3g3v1406290.1 135.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10913 4 246767501 246767944 Seca2g01333 2 22264521 22266304 PCT