Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10737 ATGAACTCTACGTCTCTCTCTATAAATCCCTCTCTCTCTCCTCCTTTTCTTTCACCTGCCACTACACCCCCTTCTTCTTCACATTCTTCATGCCCTCAGATTTCTGCTAGATTTCAACCGTTTGGAGCTAAACCCATCACCCCCTTTTGTATAAAGATTCGATTTTGCTCTTTGCAAGGGTCAAAGGGTGTGAAAAGCAGAAAAAGTTTGGTGCTTGGAGCTACCAACATGACTATAGCAGAGGATAGTCTGCTAAACGCGATAGAGGAAGAAGAGAGTCCTCCTGAGTCTGTTCTGCTTGACCCTGAGAGCAATTCCAGGCCTCGTCGAATTGCTCTATTCGTTGAGCCTTCTCCTTTTGCATATGTCTCAGGATACAAAAATCGTTTTCAGAATTTTATTAAATACCTTCGAGAAATGGGAGATGAGGTGATGGTTGTGACAACACATGAAGGAGTACCCAAGGAATTTTATGGAGCCAAATTAATTGGTTCCCGGAGTTTCCCTTGTCCCTGGTATCAGAAGGTACCGCTCTCTCTGGCACTTAGTCCAAGAATAATTTCAGCTGTTGCCCAGTTTAAGCCTGACATAATTCATGCATCATCACCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATGTCCTACCATACTCATGTACCTGTATACATTCCAAGATACACCTTTAGTTGGCTGGTGCAACCCATGTGGATGGTCATAAAATTTCTGCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTGGAAGGGATCTTGAAGCAGCTCAAGTAACCGCAGCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCCCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGCCTCATGGATAGGCTTCCTGAAGCACGAATTGCTTTTATTGGAGATGGACCCTACAGGTGA 1059 0.44 MNSTSLSINPSLSPPFLSPATTPPSSSHSSCPQISARFQPFGAKPITPFCIKIRFCSLQGSKGVKSRKSLVLGATNMTIAEDSLLNAIEEEESPPESVLLDPESNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPKEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISAVAQFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWMVIKFLHRAADLTLVPSAAIGRDLEAAQVTAANKIRLWNKGVDSESFHPRFKSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKSLMDRLPEARIAFIGDGPYR. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10737 352 Gene3D Glycogen Phosphorylase B; 110 310 - -
Seca4g10737 352 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 106 352 - -
Seca4g10737 352 MobiDBLite consensus disorder prediction 1 15 - -
Seca4g10737 352 MobiDBLite consensus disorder prediction 1 31 - -
Seca4g10737 352 Pfam Glycosyltransferase Family 4 128 291 IPR028098 -
Seca4g10737 352 FunFam Sulfoquinovosyl transferase SQD2 110 305 - -
Seca4g10737 352 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 111 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10737 Seca-Chr4 244329548 244332918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10737 52 352 Glycosyltransferase AT5G01220 77.076 2.68e-172 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10737 K06119 - gmx:100780899 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10737 4 244329548 244332918 Seca4g10737 4 244329548 244332918 ECH
Seca4g10737 4 244329548 244332918 Seca2g01634 2 29643090 29648416 PCT