Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10181 ATGGCGACAATGAACCCTTTCGATTTGTTGGGCGATGATGCTGAGGACCCATCGCAGTTGATCGCCGCCGAACAGCAGAAGGCGGCGGCGGCAGCAGCGGCGGCTCCGAAGAAGGGTCAGGAACAAGGCAAAGGTTCGAAGCTTTCTCAGCAGAACAAGCCGGCTCAGTTGCCTTCGAAGCCGCTCCCTCCTTCTCAGGCTGATTTTTCCCCTTTTCTACTGATAGTGAGGGAGGCAAAAACTGAAGTTTCTCGTGGTGGTCGTGGAGGTGGCCGAGGTGGACGAGGTTATGGTGGACGTGGTCGTGGTGGCTTTGGCCGTGATTTTAACAATGATGAGAACTCATTTCCTGCCTCTGGAGCCCCTGCTAATCAAGGTGCTTTTGAGGAAGGAGATTCTGGGAATCCCTCAGAAAGGCGTGGTTTTGGTGGACCTCGTGGGCCTTATCGTGGTGGTCGCCGTGGAGGTTTTAGCAACGGCGAAGCTGGTGAAGATGGACGCCCACGAAGAGCATTTGAACGCCGCAGTGGGACTGGACGAGGAAGTGAAATCAAACGTGAAGGTTCTGGACGAGGGAACTGGGGAACACAGTCTGATGAAATTGCTCAGGTGACTGAGGAGGTGGTGAATGAGACTGAAAAGAATTTGGGTGATGAGAAGCCTGCAGGAGAGGAAGATGCAGCAGATGGAAACAAGGAGAGTCCTGCTAATGAAACTGAAGAAAAAGAACCTGAGGATAAGGAGATGACACTGGAAGAATATGAGAAAGTGCTGGAAGAGAAAAGGAAAGCCCTGCAGGCACTCAAGACTGAAGGGAGAAAGGTTGACACTAAGGAGTTTGAATCCATGCAGGCACTGTCAAACAAGAAAGACAATGATGACATCTTCATTAAATTGGGATCTGACAAGGATAAGCGAAGAGATGCACTTGAGAAGGAGGAAAAATCAAAGAAGTCTGTCAGCATTAATGAGTTTCTGAAGCCTGCTGAAGGAGAGAGGTACTACAACCCTGGTGGGCGCGGCCGTGGACGTGGACGTGGTTCAAGAGGAGGTTACAGTGGAATTGCAGCCAGCAATGTACCAGCTCCATCTATTGAGGATCCAGGGCAATTCCCAACCTTGGGCAAGTGA 1131 0.5111 MATMNPFDLLGDDAEDPSQLIAAEQQKAAAAAAAAPKKGQEQGKGSKLSQQNKPAQLPSKPLPPSQADFSPFLLIVREAKTEVSRGGRGGGRGGRGYGGRGRGGFGRDFNNDENSFPASGAPANQGAFEEGDSGNPSERRGFGGPRGPYRGGRRGGFSNGEAGEDGRPRRAFERRSGTGRGSEIKREGSGRGNWGTQSDEIAQVTEEVVNETEKNLGDEKPAGEEDAADGNKESPANETEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEGRKVDTKEFESMQALSNKKDNDDIFIKLGSDKDKRRDALEKEEKSKKSVSINEFLKPAEGERYYNPGGRGRGRGRGSRGGYSGIAASNVPAPSIEDPGQFPTLGK. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10181 376 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 376 IPR039764 GO:0003723
Seca4g10181 376 MobiDBLite consensus disorder prediction 267 376 - -
Seca4g10181 376 MobiDBLite consensus disorder prediction 211 254 - -
Seca4g10181 376 MobiDBLite consensus disorder prediction 24 254 - -
Seca4g10181 376 MobiDBLite consensus disorder prediction 163 187 - -
Seca4g10181 376 Gene3D - 166 279 - -
Seca4g10181 376 MobiDBLite consensus disorder prediction 267 321 - -
Seca4g10181 376 Coils Coil 251 271 - -
Seca4g10181 376 Pfam Stm1 1 90 IPR019084 -
Seca4g10181 376 Pfam Hyaluronan / mRNA binding family 168 275 IPR006861 -
Seca4g10181 376 MobiDBLite consensus disorder prediction 191 210 - -
Seca4g10181 376 SMART HABP4_PAI_RBP1_2 168 276 IPR006861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10181 Seca-Chr4 236111027 236115837 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10181 K13199 - gmx:100791259 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10181 4 236111027 236115837 Seca4g10181 4 236111027 236115837 ECH
Seca4g10181 4 236111027 236115837 Seca2g00739 2 11373129 11377302 PCT