Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10176 ATGAAGCTAACCACCTCCTTTAGACCTCTATATCCTACTCAAACCCTACTCCTTACCACAACAACAAGCTACATTCAACAAGCAAAACCATACAAATTAAAACAGCCACATAATAATATTGTACAAAGTATAGAGAAAATGATAAATCTAGAAAGCCATAATGTATCACCACCACCATCATCATCAAAGAAACTTGGAAAGAGATGGATGGAGTATCAAGGTATGAACAACTGGGAAGGTTTGCTTGATCCATTGGACAACAATCTACGTGCTGAAATTCTTAGGTATGGCCATTTCGTGGATGCTGCTTATAAATCCTTCGAGTTCAACCCTTCTTCACCTTCCTATGCCTCTTGTAGGTTCCCCAATACCACACTTTTGGACAAGTGTGGTTTGCCAAACACAGGCTACAAGGTAACCAAACAATTACATGCAACTTCAGGTATTCAACTACATCCTTGGGTGAAGAACAATTGCAATGTATCAACGTGGGTTTCAACCCAATCAAGCTACATTGGCTATGTCGCAGTGTGTGACAACAAGGAGGAGATCAAAAGACTAGGTCGTAGAGATGTTGTTGTTGCATATAGAGGAACAATTACATGCTTTGAATGGCTTGAAAACTTGCGTGCCACTCTCACACACCTTCCTATCCCATGCAAAAGAGGGTTTCAAAAAGGCATAACATTGGAATTGGAGGATCAAAGTGGATCACCACCACCACCAATGGTTGAAAGTGGGTTCTTGAGTCTCTACACCTCACCTTGCAATTTTGAACCCTCTCTTCAACACATGGTTCGGCAAGAGATTGCTCAGATTCTCCAAACCTATGGTGGTAGGGAGCCGTTGAGCTTCACGCTCATCGGCCATAGTCTTGGGGCGGCGTTAGCCATTCTCACGGCATATGATATCAGCACCGTCTTTACTCGGTTGCCGATGGTGACCGTCATATCATTTGGTGGTCCCCGTGTCGGCAACCGAGGATTTAGACGACGCTTGGAGAAGAAAGGGACAAAGATATTGCGTGTAGTGAACTCCGATGATGTTGTTACCAAGATGCCAGGGTTTGTGTTCCATGATGGACACATGGCGAGCAGATGCAGTGTCCATATGGAAGGAGTGTCAGGCTGGATCCGGAAGATAGTGGAGAAAGAAGGGTGGCTTTACACTGAGGTTGGGGAGGAGCTCCGACTCTCCAGTAGGGATTCGCCGTACCTGAATGGTGCAAATGTTGCCACATGTCATGAGTTGAACACTTATCTCCACCTTGTTGATGGTTTCATTAGCTCCAAATGTCCCTTTAGAGCCACTGCAAAGAGGTTCCTTTTGCGGTGA 1335 0.4487 MKLTTSFRPLYPTQTLLLTTTTSYIQQAKPYKLKQPHNNIVQSIEKMINLESHNVSPPPSSSKKLGKRWMEYQGMNNWEGLLDPLDNNLRAEILRYGHFVDAAYKSFEFNPSSPSYASCRFPNTTLLDKCGLPNTGYKVTKQLHATSGIQLHPWVKNNCNVSTWVSTQSSYIGYVAVCDNKEEIKRLGRRDVVVAYRGTITCFEWLENLRATLTHLPIPCKRGFQKGITLELEDQSGSPPPPMVESGFLSLYTSPCNFEPSLQHMVRQEIAQILQTYGGREPLSFTLIGHSLGAALAILTAYDISTVFTRLPMVTVISFGGPRVGNRGFRRRLEKKGTKILRVVNSDDVVTKMPGFVFHDGHMASRCSVHMEGVSGWIRKIVEKEGWLYTEVGEELRLSSRDSPYLNGANVATCHELNTYLHLVDGFISSKCPFRATAKRFLLR. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10176 444 CDD Lipase_3 124 363 - -
Seca4g10176 444 Gene3D alpha/beta hydrolase 68 442 IPR029058 -
Seca4g10176 444 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 43 438 - -
Seca4g10176 444 SUPERFAMILY alpha/beta-Hydrolases 93 357 IPR029058 -
Seca4g10176 444 Pfam Lipase (class 3) 193 356 IPR002921 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10176 Seca-Chr4 235978030 235979364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10176 64 444 Acyl Lipid Metabolism Gene Families AT2G44810 62.730 1.00e-171 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10176 K16818 - gmx:100800549 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10176 4 235978030 235979364 Seca4g10176 4 235978030 235979364 ECH
Seca4g10176 4 235978030 235979364 Seca2g00734 2 11056213 11057211 PCT