Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09362 ATGGATCAGTTGGGAAGCGTAATGCACTTCCTTCAGGACAAGACCATTTTGGTCACTGGTGCCACTGGCTTCCTTGCAAAAATCTTTGTGGAAAAGATACTGAGGGTTCAACCAAATGTGAAGAAGCTTTATCTTCTTTTGAGAGCCACAGATAGTGAATCTGCTACTCAACGCTTACACAATGAGGTGAGTGTACAAATATTACTACTCCCTTTAATTTATATATATAAAGCTACCCAAGATCTAAAATGTGTACGTGATGGCCTTATTTACCCTTGTACATGTACCTAG 291 0.3952 MDQLGSVMHFLQDKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRATDSESATQRLHNEVSVQILLLPLIYIYKATQDLKCVRDGLIYPCTCT. 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09362 96 Gene3D - 7 76 - -
Seca4g09362 96 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 56 IPR036291 -
Seca4g09362 96 PANTHER MALE STERILITY PROTEIN 2-RELATED 7 60 IPR026055 GO:0080019
Seca4g09362 96 Pfam Male sterility protein 18 65 IPR013120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09362 Seca-Chr4 222395456 222396266 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09362 6 62 Acyl Lipid Metabolism Gene Families AT3G44560 77.193 1.62e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09362 K13356 - gmx:100805240 112.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09362 4 222395456 222396266 Seca4g09362 4 222395456 222396266 ECH
Seca4g09362 4 222395456 222396266 Seca4g04395 4 80628527 80637490 PCT