Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04395 ATGGAGCTGGGAAGCATACTCCACTTCCTTCAGGAGAATACCATTTTAATCACAGGAGCCACTGGCTTCCTCGCCAAAATTTTGTTGGAGAAGATATTGAGAGTTCAACCAAATGTTAAGAAGCTTTATCTTCTTTTAAGGGCTGCAGATGCCAAATCTGCTACTCACCGCTTGCACAATGAGATCATAGGGAAGGACTTGTTTAGAATGCTAAAGGAAAATTTGGGAGGAAATTTTATTTCCTTTGTTTCGGAAAAGGTGACTCTGGTTCCTGGGGACATTTCTCGTGAAGACTTGGGATTGAAGGATTCTAATCTAAAGGAAGAGATTTACAATCAAACAGATGTTATTATCAATCTAGCAGCAACTACTAACTTTGATGAAAGGTATGATATATCACTGGGCCTAAATACCTTTGGAGTTAAGTATGTTATTGACTTTGCCAAAAAATGTACTGAACTCAAGGTTCTTGTGCATGTATCAACAGCTTATGTATGTGGTGAGGGAAAAGGGCTCATATTAGAGAACCCATATCACTTGGGTGATTCACTAAATGGGGTAAAGGGACTAGACATTGATGCTGAAGAGAAAGTGGTGCGAGACAAATTGGGTGAGCTACGAAACCTGGGAGCCACAGAGGATGAAACTAAAGAGGCCATGAAGGACTTGGGTATCAGCAGGGCAAAACTGTATGGATGGCCAAACACATATGTATTCACAAAGGCAATGGGGGAGATGCTTGTGGAGCAACTAAAAGGAAACTTATCCATAGTTATTATTCGCCCTACCATTGTTACCAGTACATTCAAAGAACCTTTCCCTGGTTGGGTTGAAGGTGTAAGAACCATTGACAGTTTAGCTTTAGCTTATGGGAAAGGAAAATTAACATGCTTCCTTGGAGATCCCAAAGCAGTTGTTGATGCGATACCAGCTGACATGGTGGTGAATGCAATACTAGTGGCAATGGTGGCTCATGCAAATCGTCCTAGTGATGATATTATATACCATGTTGGTTCATCTCATAGAAAACCACTCAGGTACAAGAATCTTACAGACTATGGGTTCGGATATTTCACTGCAAAACCATGGATAAACAAGGATGGAAAAACCATCAAGGTTGGCAAAATCAAAGTATTGAGCAACATGGGTAGCTTCCGGAGATATATGTTCATTCGTTACTTGCTTTTATTAAAGGGACTTAAGCTGGCAAATACTGCATTTTGCCAGTATTTCCAAGGAACTTATCTTGATCTCAATAGGAAGATCCAGATTGTAATGCGGCTGGTGGACCTTTACAAACCTTACTTGTTCTTCAACGGCATATTTGATGACATGAATACAGAGAAGCTGAGAACGGCAACAAAACAAGGTGGGGTGGAGACAGAGTTGTTTTACTTTGACCCCGAAGTGATAGATTGGGATGATTACTTTTTGAACATCCACTTCCCTGGTGTGGTGAAGTACATTTTCAAGTGA 1476 0.4065 MELGSILHFLQENTILITGATGFLAKILLEKILRVQPNVKKLYLLLRAADAKSATHRLHNEIIGKDLFRMLKENLGGNFISFVSEKVTLVPGDISREDLGLKDSNLKEEIYNQTDVIINLAATTNFDERYDISLGLNTFGVKYVIDFAKKCTELKVLVHVSTAYVCGEGKGLILENPYHLGDSLNGVKGLDIDAEEKVVRDKLGELRNLGATEDETKEAMKDLGISRAKLYGWPNTYVFTKAMGEMLVEQLKGNLSIVIIRPTIVTSTFKEPFPGWVEGVRTIDSLALAYGKGKLTCFLGDPKAVVDAIPADMVVNAILVAMVAHANRPSDDIIYHVGSSHRKPLRYKNLTDYGFGYFTAKPWINKDGKTIKVGKIKVLSNMGSFRRYMFIRYLLLLKGLKLANTAFCQYFQGTYLDLNRKIQIVMRLVDLYKPYLFFNGIFDDMNTEKLRTATKQGGVETELFYFDPEVIDWDDYFLNIHFPGVVKYIFK. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04395 491 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 338 IPR036291 -
Seca4g04395 491 CDD FAR_C 415 490 IPR033640 -
Seca4g04395 491 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 491 IPR026055 GO:0080019
Seca4g04395 491 Pfam Male sterility protein 393 491 IPR033640 -
Seca4g04395 491 Pfam Male sterility protein 17 318 IPR013120 -
Seca4g04395 491 CDD FAR-N_SDR_e 13 362 - -
Seca4g04395 491 Gene3D - 9 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04395 Seca-Chr4 80628527 80637490 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04395 112 490 Acyl Lipid Metabolism Gene Families AT4G33790 61.214 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04395 K13356 - gmx:100798338 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09362 4 222395456 222396266 Seca4g04395 4 80628527 80637490 PCT