Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09257 ATGCCATCATCAATTTCCTCTTTCCTCCATATGGTTCCTCTCTTCTCTCTTTTATTCTCATTCATGATTCTTTGTACTAGTGCTCAGGGTCCACCTTCACCTGGGTACTACCCTAGTTCCAAAATCAGGTCTGTTAGTTTTGAACAAGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAGAGTAGACCAGGACACATTAACAATATGGCTTGACTCTACCTCAGGGAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGATACTTTGGTGCTGCAATTAAGCTTCAACCTGGTTATACTGCAGGAGTCAATACATGTATTTATCTTTCAAACAACCAAGACTACCCAGGAAACCATGATGAAATAGACATTGAGTTCCTTGGAACCACGCTAGATAAGCCCTATGTTCTGCAGACAAATGTATACATCAGAGGAAGTGGTGATAGGAAGATTATAGGAAGAGAAATGAAGTTTCACCTTTGGTTCGACCCAACAGAAGATTTTCACAACTATGCCATTCTATGGGAGCCCAATGAGATCATCTTTTTGGTAGATGATGTCCCCATAAGGAGGTATCCTAGGAAGAGTGATGCTACATTCCCTGCAAGACCAATGTATGTGTATGGATCAATATGGGATGCATCTTCATGGGCTACAGAGGATGGAAAATACAAAGCTGATTATAAATACCAACCCTTCATTGGTAGATACAGAAACTTCAAACTACAAGGTTGTTCCACTGAAGCCTCCATCTCATGCCAGCCACCATCAGCCTCACCATCTGGCTTTAACAGCCTAAGCCCTGAACAATTTTCTTCAATGCAATGGGTCCAAAACAACTACATGATCTATAACTATTGCCATGATCCTAGGAGAGATCATACACAAACTCCAGAGTGCTAA 906 0.4161 MPSSISSFLHMVPLFSLLFSFMILCTSAQGPPSPGYYPSSKIRSVSFEQGFRNLWGPQHQRVDQDTLTIWLDSTSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVNTCIYLSNNQDYPGNHDEIDIEFLGTTLDKPYVLQTNVYIRGSGDRKIIGREMKFHLWFDPTEDFHNYAILWEPNEIIFLVDDVPIRRYPRKSDATFPARPMYVYGSIWDASSWATEDGKYKADYKYQPFIGRYRNFKLQGCSTEASISCQPPSASPSGFNSLSPEQFSSMQWVQNNYMIYNYCHDPRRDHTQTPEC. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09257 301 Pfam Glycosyl hydrolases family 16 48 230 IPR000757 GO:0004553|GO:0005975
Seca4g09257 301 Gene3D - 27 301 - -
Seca4g09257 301 SUPERFAMILY Concanavalin A-like lectins/glucanases 46 301 IPR013320 -
Seca4g09257 301 PIRSF EndGlu_transf 8 301 IPR016455 GO:0010411|GO:0016762|GO:0042546
Seca4g09257 301 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 265 301 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Seca4g09257 301 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 26 238 IPR000757 GO:0004553|GO:0005975
Seca4g09257 301 FunFam Xyloglucan endotransglucosylase/hydrolase 34 301 - -
Seca4g09257 301 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 44 301 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09257 Seca-Chr4 219711989 219714956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09257 15 301 Glycoside Hydrolase AT3G44990 65.292 3.33e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09257 K08235 - gmx:100781528 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04171 4 74951610 74954948 Seca4g09257 4 219711989 219714956 PCT