Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04171 ATGTCATCATCAACAATAACCTCTTTCTTCCCCAAAATGGTTCCTCTCTTCTCTCTTCTTGTACTCTCACTCACAATTTGTTCTAGTGCTCAGGGTCCACCTTCACCTGGCTACTACCCCAGTTCCAAAATTAGTCCTGTTAGCTTTAATCAAGGCTTTAGAAACCTCTGGGGACCTCAACATCAGAGACTAGACCAAGGCTCATTAACAATTTGGCTTGACTCTAACTCTGGAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGATACTTTGGTGCTGCAATTAAGCTTCAACCTGGTTATACTGCAGGAGTCATTACATCTTTATACCTTTCAAACAACCAAGACCACCCGGGAAACCATGATGAAATTGACATTGAGTTCCTTGGTACCACACCGGGTAAGCCTTATGTCTTGCAGACAAATGTATATATCAGAGGAAGTGGCGATGGGAACATTATAGGAAGAGAGATGAAGTTTCACCTTTGGTTCGACCCAACACAAGATTTTCACAACTATGCCATTCTATGGAAACCCACTGAGATAATATTTTTGGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAGGAATGAAGCTACATACCCCTCAAGACCAATGTATGTGTACGGATCCATATGGGATGCATCTTCATGGGCAACAGAGGATGGAAAATACAAAGCTGATTATAAATACCAACCCTTCATTGGTAGGTACAAAAACTTCAAACTCCAAGGTTGCACCACTGAAAGCCCTGCCTCATGTCATCCACCCTCTGCCTCTCCATCTGGCTATGGAAGCCTGAGTCCTCAGCAGTTTGGGGTCATGCAATGGGTCCAAAACAACTACATGGTGTACAATTATTGTCATGACCCTAGGAGAGACCATACACTCACCCCAGAGTGTTAA 912 0.4353 MSSSTITSFFPKMVPLFSLLVLSLTICSSAQGPPSPGYYPSSKISPVSFNQGFRNLWGPQHQRLDQGSLTIWLDSNSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPGKPYVLQTNVYIRGSGDGNIIGREMKFHLWFDPTQDFHNYAILWKPTEIIFLVDDVPIRRYPRRNEATYPSRPMYVYGSIWDASSWATEDGKYKADYKYQPFIGRYKNFKLQGCTTESPASCHPPSASPSGYGSLSPQQFGVMQWVQNNYMVYNYCHDPRRDHTLTPEC. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04171 303 FunFam Xyloglucan endotransglucosylase/hydrolase 36 303 - -
Seca4g04171 303 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 303 IPR013320 -
Seca4g04171 303 PIRSF EndGlu_transf 12 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Seca4g04171 303 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 48 303 IPR044791 GO:0004553
Seca4g04171 303 Pfam Glycosyl hydrolases family 16 50 232 IPR000757 GO:0004553|GO:0005975
Seca4g04171 303 Gene3D - 29 303 - -
Seca4g04171 303 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 28 240 IPR000757 GO:0004553|GO:0005975
Seca4g04171 303 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 266 303 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04171 Seca-Chr4 74951610 74954948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04171 17 303 Glycoside Hydrolase AT3G44990 67.698 2.04e-146 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04171 K08235 - gmx:100781528 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04171 4 74951610 74954948 Seca4g04171 4 74951610 74954948 ECH
Seca4g04171 4 74951610 74954948 Seca4g09257 4 219711989 219714956 PCT