Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09204 ATGCGAATCTTCATTGTGCTTTCGCTCACAACCCTTCTCCTCTTCTCCTCCTTCTCTCATGTTCTATGTGAAGCGGAAGAAGATCTCAGCTTCCTCGACGAACCCGATGAGAACGACTCCTACCACCACCACCACCACGGCGGCTTCGACGACGCCACCGCCACCGATTTCGACGACTTCTCCGGCTTCGAGGATGCGGAGGCGGAGGCTTACAAAGAGCCCGAGGTGGACGACAAGGACGTCGTCGTTTTGAAGGATAAGAATTTCACTGACGTGGTGAAGAACAATCAATTCGTGATGGTTGAATTCTACGCGCCGTGGTGCGGTCACTGCCAGGCCTTGGCACCGGAGTATGCCGCAGCCGCCACCGAGTTGAAGGGCGATAATGTCATTTTGGCCAAGGTTGATGCCACTGAGGAGAATCAGTTGGCTCAGCAGTACGATATTCAGGGTTTCCCCACTATCTACTTCTTCGTCGATGGCATTCACAAACCTTATAATGGCCACAGGACCAAAGAAGCTATAGTGACCTGGATTAAGAAGAAGACAGGGCCTGGTATACACAACATAACTACAGTGGATGATGCTCAACGCATTTTGACCTCCGAAAGTAAAGTTGTTTTGGGCTTCCTCGACTCTTTAGTTGGTCCTGAGAGTGAGGAGCTTGCTTCTGCTTCAAGACTTGAGGATGATGTCAATTTTTATCAAACTGTGAATCCTGATGTGGCAAAGCTTTTCCATATTGACCCTACTGTTAAACGCCCAGCTTTGATCCTGGTCAAGAAAGAGGCGGAAAAGCTGAACCATTTTGATGGCCAATTTGTTAAGTCTGAAATAGCAGACTTTGTCTCCTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCAGCCGTCTTTGAAAATCCAATAAAAAAACAGTTGTTGTTGTTTGCGACTTCAAACGATTCAGAGAAATTCATCCCAGTATTTCAAGAAGCAGCGAAATTTTTCAAGGGAAAGTTGATCTTTGTATACGTGGAAATGGATAATGAAGATGTTGGAAAGCCTGTTTCAGACTACTTTGGTGTCAGTGGGAGTGCCCCAAAAGTACTCGCATACACTGGAAATGATGATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTGTTGACAAAATTAAGTCATTTGGGGAAGATTTCCTTGAAGACAAGCTAAAACCTTTTTTCAAGTCAGATCCAGTTCCTGAAAGTAATGACGGTGATGTGAAAATAGTTGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCGAAGGATGTTCTTCTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAAGCACTTGAACCAATATACAACAAGCTTGCAAAACATCTTCGTGGAATTGAGTCTCTTGTGATAGCCAAGATGGATGGAACAACAAATGAACATCCCAGGGCAAAGGCTGATGGATACCCTACTATACTCTTCTTCCCAGCAGGAAACAAGAGTTTTGACCCTATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTATAAGTTCCTCAAGAAGCATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTTCTAAACCTGAGAGCTCTGATGTCAAGGGGAGCTCTGATGCCAAGGAGAGTTCTGATGCGAAAGAGAGCCAGAGTAGCAACAGCGATGTGAAGGATGAATTATGA 1716 0.4493 MRIFIVLSLTTLLLFSSFSHVLCEAEEDLSFLDEPDENDSYHHHHHGGFDDATATDFDDFSGFEDAEAEAYKEPEVDDKDVVVLKDKNFTDVVKNNQFVMVEFYAPWCGHCQALAPEYAAAATELKGDNVILAKVDATEENQLAQQYDIQGFPTIYFFVDGIHKPYNGHRTKEAIVTWIKKKTGPGIHNITTVDDAQRILTSESKVVLGFLDSLVGPESEELASASRLEDDVNFYQTVNPDVAKLFHIDPTVKRPALILVKKEAEKLNHFDGQFVKSEIADFVSSNKLPLVTIFTRESAPAVFENPIKKQLLLFATSNDSEKFIPVFQEAAKFFKGKLIFVYVEMDNEDVGKPVSDYFGVSGSAPKVLAYTGNDDGKKFVLDGEVTVDKIKSFGEDFLEDKLKPFFKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYNKLAKHLRGIESLVIAKMDGTTNEHPRAKADGYPTILFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPTSTSKPESSDVKGSSDAKESSDAKESQSSNSDVKDEL. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09204 571 NCBIfam protein disulfide-isomerase domain 84 182 IPR005788 GO:0003756
Seca4g09204 571 PANTHER PROTEIN DISULFIDE ISOMERASE 13 552 - -
Seca4g09204 571 CDD PDI_a_family 82 179 - -
Seca4g09204 571 PRINTS Thioredoxin family signature 107 116 - -
Seca4g09204 571 PRINTS Thioredoxin family signature 99 107 - -
Seca4g09204 571 PRINTS Thioredoxin family signature 148 159 - -
Seca4g09204 571 Gene3D Glutaredoxin 69 183 - -
Seca4g09204 571 Gene3D Glutaredoxin 413 527 - -
Seca4g09204 571 FunFam Protein disulfide-isomerase 70 182 - -
Seca4g09204 571 SUPERFAMILY Thioredoxin-like 189 298 IPR036249 -
Seca4g09204 571 Gene3D Glutaredoxin 288 412 - -
Seca4g09204 571 Gene3D Glutaredoxin 184 287 - -
Seca4g09204 571 CDD PDI_a_PDI_a'_C 419 521 - -
Seca4g09204 571 FunFam protein disulfide-isomerase A2 183 287 - -
Seca4g09204 571 SUPERFAMILY Thioredoxin-like 286 416 IPR036249 -
Seca4g09204 571 SUPERFAMILY Thioredoxin-like 74 184 IPR036249 -
Seca4g09204 571 ProSitePatterns Thioredoxin family active site. 439 457 IPR017937 -
Seca4g09204 571 ProSiteProfiles Thioredoxin domain profile. 62 184 IPR013766 -
Seca4g09204 571 ProSiteProfiles Thioredoxin domain profile. 397 526 IPR013766 -
Seca4g09204 571 SUPERFAMILY Thioredoxin-like 414 526 IPR036249 -
Seca4g09204 571 MobiDBLite consensus disorder prediction 531 571 - -
Seca4g09204 571 ProSitePatterns Thioredoxin family active site. 100 118 IPR017937 -
Seca4g09204 571 NCBIfam protein disulfide-isomerase 79 571 IPR005792 GO:0003756
Seca4g09204 571 FunFam Protein disulfide-isomerase 288 413 - -
Seca4g09204 571 Pfam Thioredoxin-like domain 223 393 - -
Seca4g09204 571 CDD PDI_b'_family 308 398 - -
Seca4g09204 571 Pfam Thioredoxin 81 181 IPR013766 -
Seca4g09204 571 Pfam Thioredoxin 419 504 IPR013766 -
Seca4g09204 571 CDD PDI_b_family 187 286 - -
Seca4g09204 571 FunFam Protein disulfide-isomerase 414 527 - -
Seca4g09204 571 MobiDBLite consensus disorder prediction 545 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09204 Seca-Chr4 218226137 218230592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09204 K09580 - gmx:100804924 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04088 4 72744259 72750503 Seca4g09204 4 218226137 218230592 PCT