Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g04088 | ATGCTAAGTCGTAGGCGACTCGTCGTTTTACTCTCGCTCACCACTCTCCTCCTCCTCTCCTCCTTCTCTCACACACTCTGCAAGAAAACCCCCCAAAACGACGACGACGATGAAGATCTCAGCTTCCTCGAGGAACCCGACGATACCTTCACTTCGCCCCACGGCCACGTCAATTACCCAGATCCCGACCACTTCGGTGACGATGGCGACGACGACGGCGACGAGGACTTCGACGACTTCTCTAGCTTCGACCCTTCCTCTGAGGAGGCGTACCATGAGCCAGAGGTGGATGAAAAAGACGTCGTCGTTTTGAAGGAGCGGAACTTCACCACCGTCGTCGAAAACAACCGCTTCGTGATGGTGGAATTCTACGCCCCCTGGTGCGGTCACTGCCAGTCCCTGGCTCCAGAATACGCCGCCGCCGCCACCGAGTTGAAGAGCGACGGCGTCGTTTTGGCCAAGGTGGATGCCACGCAGGAGCATGAATTGGCCCATGAGTACGACGTTCAGGGTTTCCCCACTGTCTTCTTCTTCATCGATGGGGTTCATAAGCCTTACACTGGCCACAGAACCAAAGATGCTATAGTGACATGGATTAGGAAGAAGATAGGACCTGGTGTATACAACATAACTACGTTGGATGATGCTGAACGCATATTGACCTCTGAAACTAAAGTCGTTTTGGGCTTCCTTGACTCTTTAGTTGGTGTTGACAGTGACGAGCTAGCTGCAGCATCAAAACTTGAGGATGATGTCAATTTTTATCAGACTGTGATTCCTGATGTGGCTAAGCTTTTCCATATTGACCCAGATGTTAAACGCCCTGCTTTGGTCTTGCTCAAGAAAGAGGAGGAGAAACTGAACCATTTTGATGGAAAATTTGCAAAAGCTGCAATAGCGGACTTTGTATCGTCCAACAAGCTTCCCTTGGTCACAACTTTTACAACGGAAAGTGCCCCATCAATCTTTGAAAGTCAAATCAAGAAACAGTTGTTGCTGTTTGTGACTTCAAATGATACAGAGAAGTTTGTTCCAGTATTTGGAGAAGCGGCTAAGTTTTTCAAGGGGAAGCTGATCTTTGTTCAAGTGGAAATGGATAATGAAGATGTTGGAAAGCCTGTTGCAGATTATTTTGGTATCACTGGGAATTCTCCCAAAGTACTTGCATACACAGGCAATGATGATGGCAGAAAATTCTTGCTTGATGGGGAGGTGACTGTTGACAAAATAAAGGTACTCTTCTCTCTCTACATCTATTTTTTTTCTCAGGCATTTGGGGAAGATTTCCTTGAAGACAAGTTAAAACCTTTCCTCAAGTCAGATCCAATTCCTGAAAGTAATGATGGTGATGTGAAAATAGTTGTTGGGAATAACTTCGACAAAATTGTCTTGGATGAGTCAAAGGATGTTCTACTTGAGATATATGCTCCCTGGTGTGGCCACTGCCAAGCTTTGGAACCCACATACAACAAGCTTGCGAAACACCTTCGTGGAATTGATTCTATTGTAATAGCCAAGATGGACGGAACAACAAATGAGCATCCAAGGGCAAAGGCTGATGGGTTCCCTACTATCCTCTTTTACCCAGCAGGAAACAAAAGTTCTGACCCTATTACTGTTGATGCGGATCGTACAGTGGTTGCCTTTTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCCAGCTCCAGAAACAAACCTTAACTTCTAAAACAGAGAGCAAGAGTTCTGATGTCAAGGAGAGTCAGAGTAGCAGCACCAACGTGAAGGATGAACTATGA | 1782 | 0.4618 | MLSRRRLVVLLSLTTLLLLSSFSHTLCKKTPQNDDDDEDLSFLEEPDDTFTSPHGHVNYPDPDHFGDDGDDDGDEDFDDFSSFDPSSEEAYHEPEVDEKDVVVLKERNFTTVVENNRFVMVEFYAPWCGHCQSLAPEYAAAATELKSDGVVLAKVDATQEHELAHEYDVQGFPTVFFFIDGVHKPYTGHRTKDAIVTWIRKKIGPGVYNITTLDDAERILTSETKVVLGFLDSLVGVDSDELAAASKLEDDVNFYQTVIPDVAKLFHIDPDVKRPALVLLKKEEEKLNHFDGKFAKAAIADFVSSNKLPLVTTFTTESAPSIFESQIKKQLLLFVTSNDTEKFVPVFGEAAKFFKGKLIFVQVEMDNEDVGKPVADYFGITGNSPKVLAYTGNDDGRKFLLDGEVTVDKIKVLFSLYIYFFSQAFGEDFLEDKLKPFLKSDPIPESNDGDVKIVVGNNFDKIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRGIDSIVIAKMDGTTNEHPRAKADGFPTILFYPAGNKSSDPITVDADRTVVAFYKFLKKHASIPFQLQKQTLTSKTESKSSDVKESQSSSTNVKDEL. | 594 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g04088 | 593 | Gene3D | Glutaredoxin | 88 | 202 | - | - | |
| Seca4g04088 | 593 | ProSiteProfiles | Thioredoxin domain profile. | 437 | 558 | IPR013766 | - | |
| Seca4g04088 | 593 | MobiDBLite | consensus disorder prediction | 65 | 83 | - | - | |
| Seca4g04088 | 593 | FunFam | protein disulfide-isomerase A2 | 203 | 307 | - | - | |
| Seca4g04088 | 593 | ProSitePatterns | Thioredoxin family active site. | 471 | 489 | IPR017937 | - | |
| Seca4g04088 | 593 | MobiDBLite | consensus disorder prediction | 567 | 593 | - | - | |
| Seca4g04088 | 593 | SUPERFAMILY | Thioredoxin-like | 447 | 558 | IPR036249 | - | |
| Seca4g04088 | 593 | FunFam | Protein disulfide-isomerase | 90 | 202 | - | - | |
| Seca4g04088 | 593 | MobiDBLite | consensus disorder prediction | 567 | 584 | - | - | |
| Seca4g04088 | 593 | CDD | PDI_b_family | 207 | 306 | - | - | |
| Seca4g04088 | 593 | CDD | PDI_a_PDI_a'_C | 451 | 553 | - | - | |
| Seca4g04088 | 593 | ProSiteProfiles | Thioredoxin domain profile. | 80 | 204 | IPR013766 | - | |
| Seca4g04088 | 593 | PANTHER | PROTEIN DISULFIDE ISOMERASE | 7 | 574 | - | - | |
| Seca4g04088 | 593 | Gene3D | Glutaredoxin | 445 | 559 | - | - | |
| Seca4g04088 | 593 | FunFam | Protein disulfide-isomerase | 446 | 559 | - | - | |
| Seca4g04088 | 593 | Pfam | Thioredoxin | 451 | 536 | IPR013766 | - | |
| Seca4g04088 | 593 | Pfam | Thioredoxin | 101 | 201 | IPR013766 | - | |
| Seca4g04088 | 593 | CDD | PDI_b'_family | 318 | 430 | - | - | |
| Seca4g04088 | 593 | ProSitePatterns | Thioredoxin family active site. | 120 | 138 | IPR017937 | - | |
| Seca4g04088 | 593 | CDD | PDI_a_family | 102 | 199 | - | - | |
| Seca4g04088 | 593 | SUPERFAMILY | Thioredoxin-like | 306 | 448 | IPR036249 | - | |
| Seca4g04088 | 593 | MobiDBLite | consensus disorder prediction | 28 | 97 | - | - | |
| Seca4g04088 | 593 | NCBIfam | protein disulfide-isomerase | 99 | 593 | IPR005792 | GO:0003756 | |
| Seca4g04088 | 593 | Gene3D | Glutaredoxin | 203 | 307 | - | - | |
| Seca4g04088 | 593 | SUPERFAMILY | Thioredoxin-like | 94 | 204 | IPR036249 | - | |
| Seca4g04088 | 593 | PRINTS | Thioredoxin family signature | 168 | 179 | - | - | |
| Seca4g04088 | 593 | PRINTS | Thioredoxin family signature | 119 | 127 | - | - | |
| Seca4g04088 | 593 | PRINTS | Thioredoxin family signature | 127 | 136 | - | - | |
| Seca4g04088 | 593 | Pfam | Thioredoxin-like domain | 243 | 411 | - | - | |
| Seca4g04088 | 593 | NCBIfam | protein disulfide-isomerase domain | 105 | 202 | IPR005788 | GO:0003756 | |
| Seca4g04088 | 593 | FunFam | Protein disulfide-isomerase | 308 | 445 | - | - | |
| Seca4g04088 | 593 | Gene3D | Glutaredoxin | 308 | 444 | - | - | |
| Seca4g04088 | 593 | SUPERFAMILY | Thioredoxin-like | 207 | 318 | IPR036249 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g04088 | Seca-Chr4 | 72744259 | 72750503 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g04088 | K09580 | - | gmx:100785630 | 882.093 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca4g04088 | 4 | 72744259 | 72750503 | Seca4g04088 | 4 | 72744259 | 72750503 | ECH | |
| Seca4g04088 | 4 | 72744259 | 72750503 | Seca4g09204 | 4 | 218226137 | 218230592 | PCT |