Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09168 ATGGGAGACAGAGCCACCCTTTTGATCTTGATCCTTGTTCTTTGTCATGGTGTGGCTGTGACAAAAGGGTACTTGTGGGCGAAAGAGGCAAAAGAAGGGCCTCCAAGGACAGACAAATTGTTCTTGTTGCAAAACTCCAAGAGCGTGGCCAAGACTGATGCAGGAGAGATGCGAGTGCTAGAAAGCAATGGTGGTAGGATTTCTGACAGGCGCTTGCACATTGGTTTTATCACTATGGAACCAAGATCGCTCTTCATTCCTCAGTACCTTGACTCCGGTTTGATCATATTCATCCGTGCAGGTGAAGCAAAGTTGGGATTCATATATAAGGATAAACTGTCGGAAAGGGAATTGAAGATGGGGGATGTATATCAAATCCCTGCTGGTTCTGCATTCTATTTGGTGAATACAGGGAAGGGTCAAACACTTCACATTATCTGCAGCATTAACCCCTCTGAAAGCTTAGGAATAGGTATTTTCGAGTCCTTCTATATTGGAGGAGGAGTCAATCCAGTGTCAGTGCTTTCTGGATTTGAACCTGAAATCCTTGAAACTGCTTTTAACGCATCAGGAGCAGAGTTGAGGAAATTCTTCATGAGGCAACATGAAGGCCCAATTGTGCATGTGGGTGATTCAGGTGCCACAACCACAAGCATATGGACCAAATTCCTTCAACTGAAGGAGGAAGACAAACTGCAGCACCTGAAGCAAATGGTGCCAGACCAAGAAGAACGTTACGATGAAGAAGAAGAAGAAGAAGAGGATCAGCAGCAAACAATTTGGTCGTGGAGGAAGCTCTTGGAATCTGTACTTGGGGATGAAATTGACAACATAAGGGAGAAGGGTACCCATAAACCCCCTCACTCTTGCAACCTCTATGACAGAAAACCAGATTTCATTAACGATTACGGTTGGAGCGTTGCTCTAGATGGCTCTGATTATTCTCCTCTCAAAAGATCTGACATTGGCATTTATCACGTCAATCTCAAAGCGGGATCCATGATGGCACCCCATGTGAACCCAAGGGCAACAGAGTATGGCATTGTGTTGAGGGGGACTGGTAGAATCCAAATTGTGTTTCCAAATGGGAGCAATGCAATGGACACCCAAATCAAAGAAGGGGACGTGTTCTTTGTACCAAGATACTTCCCCTTCTGCCAAATAGCATCAAAGAGTGGATCACTAGAGTTCTTTGGATTCACCACTTCGGCCAGGAAAAACAAGCCACAGTTTTTGGTGGGTGCTACATCGCTTTTAAAGACCATGATGGGGCCTGAGCTTGCAGCTGCTTTTGGGGTGAGCGAGGACACAGTGAGGAGTGTGGTTAATGCACAACACGAGGCTGTGATACTACCTACTCCATGGGCTGCAAATGCTGACCAGAATAATAAGAACAAGGTGGAGTCGCTTCCAAGTATTATTAGGAATGACATGATTATGAACTTTTGA 1449 0.452 MGDRATLLILILVLCHGVAVTKGYLWAKEAKEGPPRTDKLFLLQNSKSVAKTDAGEMRVLESNGGRISDRRLHIGFITMEPRSLFIPQYLDSGLIIFIRAGEAKLGFIYKDKLSERELKMGDVYQIPAGSAFYLVNTGKGQTLHIICSINPSESLGIGIFESFYIGGGVNPVSVLSGFEPEILETAFNASGAELRKFFMRQHEGPIVHVGDSGATTTSIWTKFLQLKEEDKLQHLKQMVPDQEERYDEEEEEEEDQQQTIWSWRKLLESVLGDEIDNIREKGTHKPPHSCNLYDRKPDFINDYGWSVALDGSDYSPLKRSDIGIYHVNLKAGSMMAPHVNPRATEYGIVLRGTGRIQIVFPNGSNAMDTQIKEGDVFFVPRYFPFCQIASKSGSLEFFGFTTSARKNKPQFLVGATSLLKTMMGPELAAAFGVSEDTVRSVVNAQHEAVILPTPWAANADQNNKNKVESLPSIIRNDMIMNF. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09168 482 Gene3D Jelly Rolls 36 219 IPR014710 -
Seca4g09168 482 CDD cupin_7S_vicilin-like_C 297 448 - -
Seca4g09168 482 SUPERFAMILY RmlC-like cupins 38 448 IPR011051 -
Seca4g09168 482 Gene3D Jelly Rolls 282 454 IPR014710 -
Seca4g09168 482 CDD cupin_7S_vicilin-like_N 49 209 - -
Seca4g09168 482 Pfam Cupin 291 438 IPR006045 -
Seca4g09168 482 Pfam Cupin 49 192 IPR006045 -
Seca4g09168 482 PANTHER OS03G0336100 PROTEIN-RELATED 7 454 - -
Seca4g09168 482 Coils Coil 232 259 - -
Seca4g09168 482 SMART Cupin_1_3 290 439 IPR006045 -
Seca4g09168 482 SMART Cupin_1_3 40 195 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09168 Seca-Chr4 217599327 217602159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09168 48 460 Miscellaneous Gene Families AT2G18540 29.454 1.10e-44 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09168 - - gmx:100818796 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04037 4 71881867 71884286 Seca4g09168 4 217599327 217602159 PCT