Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04037 ATGCTATCATCAAACCAAGCAGTTATGGGAAACACAACCACCCTTCTGCTCTTTCTCCTTGTTCTCTGCGTCATCACAATGTGCTTCCCTCAAGATGAAGGTTGGAGAATAGATTTAGAAAAGACTTCATCATGTTCATCAAACAAATTGTTCTTGATGCAAAACTCCAAGACCGTGGTCAAGACTGATGCAGGGGAAATGCGAGTACTGAAAAGCAATGCTGCTATGAGTTTGGATAGACAATTGCACATTGGCTTCATCACTATGGAACCAAAGTCCTTATTCATTCCTCAGTATCTCGACTCCAATTTGGTCATATTCCTCAGTAGAGGGGAAGCAAAATTGGGGTTCATATATGAAGATGAACTAGCAGAAAGGCGATTGAAGACAGGGGATGTGTATGTAATTCCAGCAGGTTCTGCATTCTATTTGGTGAATATAGGAGAAGGTCAGAGACTTCATGTGATTTGCAGCATTGACCCCTCTGAGAGCTTCGGAGGTTTGGCCATGCAGTCCTTCTATATCGGTGGAGGAGACAATCCACATTCAGTACTTTCTGGATTTGATTCCGTGATCCTTCAAACTGCATTTAACGGATCAAGAACAGATATAAAGAAAATCTTCAAGAAGAGACTAGATGGGCCAATTGTGTACTTGGGTGATGCTCATTCTCCTAGCCTTTGGACCAAATTCCTTCAACTTAAGAAGGAAGACAAAGTGCAAACCCTGAAGAAAATGGTTCAAGGGCAAGGCCAAGAAGAACACAGTGAAAAAGAAGAAGAGGAAGAGGAGCAAACAAGTTGGTCATGGAGGAAGCTCTTGGAAAATGTATTTGGAAAGAAGAACAAGATTGAGAACAAAGAAACAGCTGATTCCCCTGACTCTTTCAACCTCTATGACAGAAAACCTGATTTCAGTAACGCTTATGGTAGAAGCAGTGCAGTGGATGGAAAAGAGTACCCTCCACTCCAAATTGTTAACATTGGCATCTTTCACGTCATTCTCACAGCGGGTTCCATGGTGACACCCCATTTGAATCCAAGGGCAATAGAGTATGGCATAGTGCTGAGGGGTTATGGTAGAATTCAGATAGTGTTTCCAAATGGAACCAATGCAATGGACACTGAGATCAAAAGAGGGGATGTGTTCTTTGTACCAAAATACTTCCCCTTCTGTCAAATAGCATCAAGGAATGGACCCTTAGAGTTCTTTGGGTTCAGCACCTCAGCTGGGAAGAACAAGCCACAGTTACTGGTGGGTGGTGTGTCACTTCTTCGGACCATGATGGGGCCTGAGCTAGCAGCTGCGTTTGGGGTGAGTGAGGACACTATGTGGCGTGTGGTTGATGCTCAACATGAGTATGTAATACTGCCCTCAACATGGGCTGCACCTGGAGATGAAGTGGAGAATGTGCAAAAGGGTATCAAAGGGTTTGCCAATGATGTGGTTATGGATGTTTTTGAATAG 1467 0.4356 MLSSNQAVMGNTTTLLLFLLVLCVITMCFPQDEGWRIDLEKTSSCSSNKLFLMQNSKTVVKTDAGEMRVLKSNAAMSLDRQLHIGFITMEPKSLFIPQYLDSNLVIFLSRGEAKLGFIYEDELAERRLKTGDVYVIPAGSAFYLVNIGEGQRLHVICSIDPSESFGGLAMQSFYIGGGDNPHSVLSGFDSVILQTAFNGSRTDIKKIFKKRLDGPIVYLGDAHSPSLWTKFLQLKKEDKVQTLKKMVQGQGQEEHSEKEEEEEEQTSWSWRKLLENVFGKKNKIENKETADSPDSFNLYDRKPDFSNAYGRSSAVDGKEYPPLQIVNIGIFHVILTAGSMVTPHLNPRAIEYGIVLRGYGRIQIVFPNGTNAMDTEIKRGDVFFVPKYFPFCQIASRNGPLEFFGFSTSAGKNKPQLLVGGVSLLRTMMGPELAAAFGVSEDTMWRVVDAQHEYVILPSTWAAPGDEVENVQKGIKGFANDVVMDVFE. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04037 488 PANTHER OS03G0336100 PROTEIN-RELATED 13 459 - -
Seca4g04037 488 SUPERFAMILY RmlC-like cupins 42 454 IPR011051 -
Seca4g04037 488 Pfam Cupin 296 442 IPR006045 -
Seca4g04037 488 Pfam Cupin 57 157 IPR006045 -
Seca4g04037 488 CDD cupin_7S_vicilin-like_N 59 219 - -
Seca4g04037 488 CDD cupin_7S_vicilin-like_C 303 453 - -
Seca4g04037 488 Gene3D Jelly Rolls 288 460 IPR014710 -
Seca4g04037 488 MobiDBLite consensus disorder prediction 245 266 - -
Seca4g04037 488 Gene3D Jelly Rolls 43 231 IPR014710 -
Seca4g04037 488 SMART Cupin_1_3 51 205 IPR006045 -
Seca4g04037 488 SMART Cupin_1_3 296 445 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04037 Seca-Chr4 71881867 71884286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04037 47 466 Miscellaneous Gene Families AT2G18540 30.184 6.47e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04037 - - gmx:547942 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04037 4 71881867 71884286 Seca4g04037 4 71881867 71884286 ECH
Seca4g04037 4 71881867 71884286 Seca4g09168 4 217599327 217602159 PCT