Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09129 ATGAAACTTCCCACTCCCACGCTATGCTTTGCCCTTTTAATCCTAAATGCTTCCTTCTTTCTCCTTGCATCAACCCAAGTTGAAGCAGCAGTCTCAGAGTTATTCGCAGAATACATTGGATCTGAGTTCAAATATGTCAAATTTTCAGATGTCCCTATTAACCCAAATGTCCAATTCCACTTCATTTTGGCTTTCGCTATTGACTACGACACATCTCCTTCTCCCACCAACGGAGAATTCAACATCTTCTGGGACAGTAAAAATCTCAGCCCTGAAGCAGTTTATTCCATCAAGAGTCAGCATCCAAATGTCAGGGTAGCCGTTAGTCTTGGAGGAAACAGCGTTAGAGGTGGTCCTGTTTACTTCAATCCATCTTCAATTGATTCATGGGTTTCTAACGCCGTTTCCTCACTTACAAAAATAATCAAGATGTATCATTTGGATGGAATTGACATTTACTATGAGCATTTCAAGGCAGATTCTGATACTTTTGCTGAGTGTATTGGACGGCTGATACAAACTCTCAAAAACAATGGGGTCATATCTTTTGCTTCCATTGCTCCATCTGCTAATGATGATGTTCAGAGTCACTACTTGGCCTTGTGGAAGAGTTATGGGGACATCATAGATTACGTTAATTTTCAGTTTTATTCATATGACAGAAGTACCACCATATCTGAGTTTATTAATTACTACAACACACAAAGCTCAAATTATAATGGCGGTGGGAAGGTGTTAGTAAGTTTTAGCACTGATGGAAGCGGTGGGTTGAAACCTGGTCATGGATTCTTCAATGCATGTCGTGAGCTCAAGAATCAGCAGAAGCTTCATGGTATCTTTGTGTTTTCGGCGGATCATTCCAAGGCAAATGGTTTCATCCATGAGAAGGAAGCACAAGCCCTTTTGGCTAGTTAA 915 0.4066 MKLPTPTLCFALLILNASFFLLASTQVEAAVSELFAEYIGSEFKYVKFSDVPINPNVQFHFILAFAIDYDTSPSPTNGEFNIFWDSKNLSPEAVYSIKSQHPNVRVAVSLGGNSVRGGPVYFNPSSIDSWVSNAVSSLTKIIKMYHLDGIDIYYEHFKADSDTFAECIGRLIQTLKNNGVISFASIAPSANDDVQSHYLALWKSYGDIIDYVNFQFYSYDRSTTISEFINYYNTQSSNYNGGGKVLVSFSTDGSGGLKPGHGFFNACRELKNQQKLHGIFVFSADHSKANGFIHEKEAQALLAS. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09129 304 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 33 304 IPR001223 GO:0005975
Seca4g09129 304 Pfam Glycosyl hydrolases family 18 60 233 IPR001223 GO:0005975
Seca4g09129 304 Gene3D Glycosidases 32 304 - -
Seca4g09129 304 PRINTS 2-S globulin family signature 32 45 IPR000677 -
Seca4g09129 304 PRINTS 2-S globulin family signature 265 284 IPR000677 -
Seca4g09129 304 PRINTS 2-S globulin family signature 77 92 IPR000677 -
Seca4g09129 304 PRINTS 2-S globulin family signature 207 230 IPR000677 -
Seca4g09129 304 PRINTS 2-S globulin family signature 94 112 IPR000677 -
Seca4g09129 304 PANTHER CHITINASE 2-LIKE 23 303 - -
Seca4g09129 304 CDD GH18_narbonin 34 287 - -
Seca4g09129 304 SUPERFAMILY (Trans)glycosidases 34 302 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09129 Seca-Chr4 216663386 216664300 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09129 - - gmx:100819164 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09128 4 216656910 216659335 Seca4g09129 4 216663386 216664300 PCT