Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09071 ATGGGTCAGAACCTTAGTTGCAGAGGCAGCCATGACCATGGTCTCTTCACTGCCGTGCAGCAAGGTGACCTTCAAATTGTCACAACTCTCTTACAGGAAGACCCAACTCTCTTGCATCAAACCACTCTCTATGATCGTCACTCTGCTCTTCATATTGCTGCAGCTAATGGCCAGATCGAGATTTACTTCTACAACTGGATATTCATTGTTGGGTCTCTCTCAGGTTTTGCCTGTCTTCACTTTTTTTTTTGGTCTTGGGTTTTGTTGCAGATTCTGTCAAGGCTTTTAGATGGATCTGTTAACCCAGATATTCTAAATCGCCAAAAGCAGACTCCGCTTATGTTAGCAGCAATGCATGGAAGGATCGCCTGTGTGGAGAAGCTCCTTGACGCGGGTGCTAATGTATTGATGTTTGATACGCTTTATGGAAGAACCTGCTTACACTATGCTGCCTACTACGGCCATTCTTCTTGCCTCAGGGCAATTCTTTCAGCTGCTCAATCTAGTCCTGTAGCTGCTTCTTGGGGATTTGCTAGGTTTGTGAATATTAGAGATGGAAAGGGTGCAACGCCATTGCACTTGGCAGCTCGTCAAAAACGGCCTGAATGTGTGCATATTCTGTTAGATAGTGGAGCTCTTGTTTGTGCTGCAACTGGTGGATATGGCTGTCCTGGGAGCACCCCCCTTCATCTTGCTGCTAGAGGGGGATCTCTGGATTGCATTCGTGAACTCTTGGCATGGGGTGCAGATCGTCTTCAACGTGATGCATCTGGGCGAATACCATATGTTGTTGCTCTGAAACATAAACACGGAGCATGTGCATCGCTGCTAAATCCTACATCTGCGGAGCCTCTTGTCTGGCCATCTCCATTGAAGTTCATTAGTGAGCTTAATCCGGAAGCTAAAGCTTTATTAGAACAGGCCTTGATGGAAGCAAACAGAGAAAGGGAGAAAAACATCTTAAAGGGGAGTGCTTACTCTCTTCCATCTCCATCACACTCTGATGGGGTAGATGATGATATCTCTGAGGTTAGTGAGTCGGAATTATGCTGTATCTGCTTTGAGCAGGTATGCACAATTGAAGTTGAGAACTGTGGCCACCAAATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCTGCCACTGCTTGTATTACTCCACCAGTTTGTCCATTTTGCCGAAGCGTAATAGCTAGACTGGTGGTTGTGCAGATAGAAACTACTACTACTAATGATGAAGCTGATCAAGATAATAATGTTGATATTCATTGTGCCAAACTAAGCAAATCAAGGAAACCAAGAAACTTGAATGACAGTGGTAGCAGCAGCTTCAAGGGACTATCCAGTGTGAGTTCATTCGGAAAGTTGGGTGGCCGAAGGATTGCTGCTGAATGGGTTGATAAACAGTGA 1425 0.4561 MGQNLSCRGSHDHGLFTAVQQGDLQIVTTLLQEDPTLLHQTTLYDRHSALHIAAANGQIEIYFYNWIFIVGSLSGFACLHFFFWSWVLLQILSRLLDGSVNPDILNRQKQTPLMLAAMHGRIACVEKLLDAGANVLMFDTLYGRTCLHYAAYYGHSSCLRAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQKRPECVHILLDSGALVCAATGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMEANREREKNILKGSAYSLPSPSHSDGVDDDISEVSESELCCICFEQVCTIEVENCGHQMCAQCTLALCCHNKPNPATACITPPVCPFCRSVIARLVVVQIETTTTNDEADQDNNVDIHCAKLSKSRKPRNLNDSGSSSFKGLSSVSSFGKLGGRRIAAEWVDKQ. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09071 474 ProSiteProfiles Ankyrin repeat region circular profile. 108 135 - -
Seca4g09071 474 SUPERFAMILY RING/U-box 345 404 - -
Seca4g09071 474 ProSiteProfiles Ankyrin repeat region circular profile. 224 250 - -
Seca4g09071 474 Gene3D - 10 174 IPR036770 -
Seca4g09071 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 419 IPR013083 -
Seca4g09071 474 PANTHER HOMEOBOX PROTEIN WARIAI 21 407 - -
Seca4g09071 474 Pfam Ankyrin repeats (many copies) 225 262 IPR002110 GO:0005515
Seca4g09071 474 ProSiteProfiles Ankyrin repeat profile. 187 219 IPR002110 GO:0005515
Seca4g09071 474 Pfam Ankyrin repeat 110 136 IPR002110 GO:0005515
Seca4g09071 474 ProSiteProfiles Ankyrin repeat region circular profile. 187 212 - -
Seca4g09071 474 ProSiteProfiles Ankyrin repeat profile. 224 256 IPR002110 GO:0005515
Seca4g09071 474 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
Seca4g09071 474 SMART ANK_2a 10 39 IPR002110 GO:0005515
Seca4g09071 474 SMART ANK_2a 187 216 IPR002110 GO:0005515
Seca4g09071 474 SMART ANK_2a 108 137 IPR002110 GO:0005515
Seca4g09071 474 SMART ANK_2a 74 104 IPR002110 GO:0005515
Seca4g09071 474 SMART ANK_2a 142 172 IPR002110 GO:0005515
Seca4g09071 474 SMART ANK_2a 224 253 IPR002110 GO:0005515
Seca4g09071 474 Gene3D - 175 280 IPR036770 -
Seca4g09071 474 SUPERFAMILY Ankyrin repeat 15 280 IPR036770 -
Seca4g09071 474 ProSiteProfiles Zinc finger RING-type profile. 350 399 IPR001841 -
Seca4g09071 474 Pfam Ankyrin repeats (3 copies) 142 212 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09071 Seca-Chr4 215644085 215647818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09071 107 277 Miscellaneous Gene Families AT5G02620 25.373 7.01e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09071 - - gmx:100786708 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03890 4 68399133 68402852 Seca4g09071 4 215644085 215647818 PCT