Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03890 ATGGGTCAGGGGTTGAGTTGCAGAGGGAGCCATGAACATGGACTCTTCCGTGCTGTGCAGCATGGGGACCTAGAAACTGTTGCAACTCTATTGCAAACACACCCAACTCTCATGCATCGCACCACTGTCTATGACCACCATTCTGCTCTTCATATTGCTGCTGCTAATGGCCAGATCCAGTCTCTGTCCTTACATTTTTCTGGTTTTTTTCTTGGGCAGGTTTTATCAAGGCTTTTAGATGGATCTGCGAATCCAGATGTGCTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCAGCAATGCACGGAAAAATCGCTTGTGTGGAAAAGCTCCTTGAAGCGGGTGCTAATGTATTAATGTTTGATGCTTGTTATGGAAGAACCTGCTTACACTATGCTGCCTACTATGGTCATTCTTCATGCGTTAAGGCAATTCTTTCTGCCGCTCAATCTAGTCCAGTTGCTGCTTCTTGGGGGTTTGCTAGGTTTGTGAATATTAGAGATGGTAGGGGTGCTACACCATTGCACTTGGCAGCCCGTAAAAAACGACCTGAATGTGTGCATATTCTATTGTGCAGTGGTGCTCTTGTTTGTGCTTCAACTGGCAGATATGGATGTCCTGGAAGCACTCCTCTTCATCTAGCAGCCAAAGGAGGGTCTCTGGATTGCATCCGGGAACTATTGGCATGGGGTGCAGATAGGCTTCAACGTGATGCATCCGGGCGGATACCATATGTAGTTGCTCTGAAGCACAGACATCATACATGTGCAGCATTGTTAAATCTTTCATCTGCACAGCCTCTTGTCTGGCCATCATCTTTGAAAATCATCAGTGAGCTTAATTCAGAGGCCAAAGCTTTATTGGAGCAGGCCTTGATGGATGCAAACAAAGAAAGAGAGAAAAAAATATTGAAAGGGAGCGCTTACTCTCCTCCATCTCCATCACACTCTGATGAGGTAGATGACAACATCTCTGAGGTTAGTGAGACGGAATTATGCTGCATCTGCTTTGAGCAGGTGTGTACAATTGAAGTCCAAGACTGTGGCCACCAGATGTGTGCACATTGCACACTAGCCCTCTGTTGTCACAAGCAGCCCAACCCTTCTAATTCTACTTCTCATCCTATCCCACCACCACCTATTTGTCCATTCTGCAGAAGCACCATAGCTAAACTGGTGGTTGTCAAGGTAGAAAATCATGATGACATTGATCAAGATAGTGTTGATATCAGTTGTTCCAAGCCAAACAAATCAAAGAAATCCATAAACTCAAGCGAGAGCGATAGCAGCAGTTTCAAGGGATTATCCAGTGTAAATTCATTTGGAAATATGGGTGGTGGCCATGGTTCTGGAGGAAGGATTGCTGATGAAAATGAGTGGGTTGATGATAAGCCACAGTGA 1401 0.454 MGQGLSCRGSHEHGLFRAVQHGDLETVATLLQTHPTLMHRTTVYDHHSALHIAAANGQIQSLSLHFSGFFLGQVLSRLLDGSANPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCVKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARKKRPECVHILLCSGALVCASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHHTCAALLNLSSAQPLVWPSSLKIISELNSEAKALLEQALMDANKEREKKILKGSAYSPPSPSHSDEVDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAHCTLALCCHKQPNPSNSTSHPIPPPPICPFCRSTIAKLVVVKVENHDDIDQDSVDISCSKPNKSKKSINSSESDSSSFKGLSSVNSFGNMGGGHGSGGRIADENEWVDDKPQ. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03890 466 MobiDBLite consensus disorder prediction 409 444 - -
Seca4g03890 466 ProSiteProfiles Ankyrin repeat region circular profile. 91 118 - -
Seca4g03890 466 MobiDBLite consensus disorder prediction 406 466 - -
Seca4g03890 466 Gene3D - 9 156 IPR036770 -
Seca4g03890 466 ProSiteProfiles Ankyrin repeat region circular profile. 170 195 - -
Seca4g03890 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 406 IPR013083 -
Seca4g03890 466 Gene3D - 157 317 IPR036770 -
Seca4g03890 466 ProSiteProfiles Ankyrin repeat profile. 207 239 IPR002110 GO:0005515
Seca4g03890 466 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Seca4g03890 466 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 165 334 - -
Seca4g03890 466 ProSiteProfiles Ankyrin repeat region circular profile. 207 233 - -
Seca4g03890 466 SUPERFAMILY Ankyrin repeat 15 260 IPR036770 -
Seca4g03890 466 Pfam Ankyrin repeat 171 198 IPR002110 GO:0005515
Seca4g03890 466 SUPERFAMILY RING/U-box 332 391 - -
Seca4g03890 466 SMART ANK_2a 125 155 IPR002110 GO:0005515
Seca4g03890 466 SMART ANK_2a 91 120 IPR002110 GO:0005515
Seca4g03890 466 SMART ANK_2a 170 199 IPR002110 GO:0005515
Seca4g03890 466 SMART ANK_2a 10 39 IPR002110 GO:0005515
Seca4g03890 466 SMART ANK_2a 207 236 IPR002110 GO:0005515
Seca4g03890 466 SMART ANK_2a 45 87 IPR002110 GO:0005515
Seca4g03890 466 Coils Coil 281 301 - -
Seca4g03890 466 Pfam Ankyrin repeats (3 copies) 73 147 IPR002110 GO:0005515
Seca4g03890 466 ProSiteProfiles Zinc finger RING-type profile. 333 386 IPR001841 -
Seca4g03890 466 ProSiteProfiles Ankyrin repeat profile. 91 123 IPR002110 GO:0005515
Seca4g03890 466 Pfam Ankyrin repeats (many copies) 207 245 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03890 Seca-Chr4 68399133 68402852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03890 10 224 Miscellaneous Gene Families AT5G02620 28.959 1.46e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03890 - - gmx:100800611 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03890 4 68399133 68402852 Seca4g03890 4 68399133 68402852 ECH
Seca4g03890 4 68399133 68402852 Seca4g09071 4 215644085 215647818 PCT