Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09048 ATGGTGGTGCAGAAGAGACTAGATTATGGATTTAATGGCTATCAGGTGCCAACCAAGCCCCGAGCTACCCGATCAGCTAGGAGATCCACATTTCAAAGAAGAGCTGAAAACAATCAAATGTGTGCATTTGACTTATTGGCCACCGTAGCTGGCAATTTATTGCAAGAGAAACAGAATCCAACCACATCTAGTGATAGATCATCAGAAAAAGAGCAGCATGGATTTGTTAAAGAAGAGTGCCAAGATGCAAATAAACCATTCAAAGCTGAGCTTTCTGATGAAGCAAGTTGTGACAGAAGATATCAACATGGATTTGTTAAAGAAGGGTGCCCGGATGCAAATAAGCCATTGAAAGCCGAACTTTCTGATGAAGGAAGTAGTGACAGGAAATGTTTCTCTAATTTCTCTTCACAAGTATACAATCAAAATTGCTGTTTGAAGGAACACCCCCATCCTGAAATTGATGGTGATTCATGCATTGCTTCTATAGTAACAAGTTCTAGTTGCTCAGAGAGGTTTGTGGCTGAGAAATTGGTGGATGGAAAAAGCCATAATGAAATGGAAAATTTTGCTAGCAAAGTTGAATTAGGTTCCTCTGGATATGTCAATAGTAGTGGTTGCAAGTTAGATGATGATGTAGGTAAAGTAAAGGATGAGCTGCCTAAGTTTGAGAAGGTTCCAATTAGTACTGGGACCGGGATGTGCTGTTTTGAGGATCCCTTGGATGAAAAACCTCCAGAATTGATCAATTCAGGTGGCAATGCTATGTTGTCTGGGTATGATGACAACATGCCTCATAGCTCATTGTCCAAAGGTTGTGACAATGTACCAGTAGTTAGTAGAGATGATGACGAAAACTTTTCTGGGTGTGCTCACCCTAATACTAAAACAAAGTCCTTTAGGCCAACAACTTGTATAGGTGATCAAAGAATAAGGAAAAAATTGGCTTCTAAAAATCAGAAAGTTGCTCAAGAACCAAAGCATGATACACTTTCTAACAATGTTTTGGATGGAAATTTGAAGCCAGTATACAGCAGTAGGAAGAACTATTATAAACGCCAAAGATCTCAAATGAATATTCCTTTCAAAAAGAGGAAGCTTTTTAACTGTAGCTCTGTTTCAAATTCTAATGGATTTATCAGAAGTGGTCACACATATTATTCACCTGAGAATGACATGAATCAAGGTGTTTCTTGTTCATCTTCTGGGATGTGTAAAGATCCTGGAATGTCATCATTGGAAGCACATCAACACTCTGCATTACGAACTAGAGATTCTCATGTGAAGCTTAGGATCAAATCGTTTAGAGTGCCAGAGCTTTTCATTGAGATTCCAGAAACTGCAACCATTGGATCCTTGAAGAGGGCAGTGATGGAGGCAGTGACCGCTGTACTCGGAGGTGGATTGCGTGTTGGTATGATTCTCCATGGAAAGAAGATTAGAGATGACAGTAAAACTCTACTTCAGACTGGAATTTCTCATGATAACCAGCTAGATGCTTTGGGCTTCACCCTGGAGCCTAATTCTTCACAAAACCTACCACTCGCATGTTCTACAGATTCTCTCCATGTTCCTAGTGGGGACATGTCCCAGCCTTTAATAGGGCATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCAGGGCTTCTCTGACATGTTACCTGAACATCAAGTAACCAGTTTAGGTAACCTTGTTGAAAGTGATCATGATTCAGCACCTTCTCCTATCAACACATCAGTTGAAAAAAATTTGACAGACTCCAAAGAACTGATTACTGTTCCTGAAATGGGTAAGGAGGCACTAGCTGTGCTACCTGTGCAACAGAAATCAAAGCGAACTGAGATTGCTCAGCGTCGAATTCGTAGGCCTTTTTCTGTTGCTGAGGTTGAAGCACTGGTTCAAGCAGTTGAGAAACTGGGAACTGGAAGGTGGCGTGATGTTAAACTTCGTGCTTTTGATGATGCAAAGCATCGGACATATGTGGATCTGAAGGATAAATGGAAAACACTAGTTCACACGGCAAGGATATCCCCTCAGCAAAGAAGGGGAGAGCCTGTTCCCCAAGAACTTTTGGACAGGGTCCTAACTGCCCACGCATATTGGTCCCAGCAACAGACTAAGCAACAGCTCAAACAGCACCCAGAAACTTGCCTTCTCCTTTAA 2166 0.4146 MVVQKRLDYGFNGYQVPTKPRATRSARRSTFQRRAENNQMCAFDLLATVAGNLLQEKQNPTTSSDRSSEKEQHGFVKEECQDANKPFKAELSDEASCDRRYQHGFVKEGCPDANKPLKAELSDEGSSDRKCFSNFSSQVYNQNCCLKEHPHPEIDGDSCIASIVTSSSCSERFVAEKLVDGKSHNEMENFASKVELGSSGYVNSSGCKLDDDVGKVKDELPKFEKVPISTGTGMCCFEDPLDEKPPELINSGGNAMLSGYDDNMPHSSLSKGCDNVPVVSRDDDENFSGCAHPNTKTKSFRPTTCIGDQRIRKKLASKNQKVAQEPKHDTLSNNVLDGNLKPVYSSRKNYYKRQRSQMNIPFKKRKLFNCSSVSNSNGFIRSGHTYYSPENDMNQGVSCSSSGMCKDPGMSSLEAHQHSALRTRDSHVKLRIKSFRVPELFIEIPETATIGSLKRAVMEAVTAVLGGGLRVGMILHGKKIRDDSKTLLQTGISHDNQLDALGFTLEPNSSQNLPLACSTDSLHVPSGDMSQPLIGHPSSPAVIHQRIQGFSDMLPEHQVTSLGNLVESDHDSAPSPINTSVEKNLTDSKELITVPEMGKEALAVLPVQQKSKRTEIAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDDAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQTKQQLKQHPETCLLL. 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09048 721 CDD SANT_TRF 623 673 - -
Seca4g09048 721 ProSiteProfiles Myb-like domain profile. 617 672 IPR001005 -
Seca4g09048 721 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 617 676 IPR017930 -
Seca4g09048 721 SMART sant 621 674 IPR001005 -
Seca4g09048 721 MobiDBLite consensus disorder prediction 63 77 - -
Seca4g09048 721 MobiDBLite consensus disorder prediction 57 77 - -
Seca4g09048 721 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 718 IPR031105 -
Seca4g09048 721 ProSiteProfiles Ubiquitin domain profile. 428 498 IPR000626 GO:0005515
Seca4g09048 721 MobiDBLite consensus disorder prediction 318 338 - -
Seca4g09048 721 SUPERFAMILY Ubiquitin-like 424 512 IPR029071 -
Seca4g09048 721 SUPERFAMILY Homeodomain-like 623 704 IPR009057 -
Seca4g09048 721 Gene3D - 610 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09048 Seca-Chr4 215247070 215253035 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09048 - - gmx:100780881 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03869 4 68100182 68108355 Seca4g09048 4 215247070 215253035 PCT