Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08971 ATGGGTGGCTTTTGGTTGTTGCAAGCAACAACTGTAACAGTGTTATTACTAGCGGTAAGCACCGCCGTCGTCCACTCATGTCCGCCGTCGGACAGGGCGGCGCTACTGGCGTTCAAGGAGGCGCTCCACGAGCCTAAGTTCGGCATCTTCAACTCATGGACCGGCGCCGACTGCTGCCACAAATGGTACGGCGTAAGCTGCGACAGAGAAACCGGCCGCGTCGCCGACATCAACCTCCGCGGCGAGGCGGAGGAGCCAATCTTCGAGAGAGCCCACCGCACAGGCTACATGACCGGTTACATCTCGCCGGCAATCTGCAAGCTCGCTCGTCTCTCCAGCATAACCGTCGCCGACTGGAAGGGAATCTCCGGCGAGATCCCTCGCTGCATCACCTCCTTGCCTTTCCTCCGAATCATCGACCTCATCGGAAACCGCATCTCCGGCACCATTCCCTACGACATCGGCAGGCTCCACCGCCTCACCGTCCTCAACGTCGCCGACAACGCAATCTCCGGCAGAATCCCTCCGTCGCTGGTGAACCTCTCCAGTCTCATGCACCTCGACCTTCGTAACAACCGGATCTCCGGGCCCATCCCGCGAGACTTCGGCAGGCTTCAAATGCTGAGCCGGGCCTTGCTGAGCGGGAATTTGTTAAGCGGGCCGATCCCGGGCTCAATTTCCCATATTTACCGTCTCGCGGATCTGGATCTATCTCGCAACCTGGTTTCCGGGCCCATACCGGAATCGCTGGGTAAAATGGCGGTTCTATCGACGCTGAATTTGGATATGAATAAGCTCACTGGGCCCATCCCAATGAGCCTTTTCAGTTCGGGAATAAGTGACTTGAACTTGAGCAGAAACAGCTTAGAGGGAAATATACCAGACATGTTTGGTGTGAGATCTTATTTTACTGTTCTGGATTTGTCGTATAACAATCTGAAAGGGGCCATCCCCAAATCAATGTCCTCTGCCTCCTTTATTGGACACTTGGATTTGAGTCATAACCATCTTTGTGGCCCGATTCCGGTTGGGTCGCCGTTTGATCATCTTGAAGCGTCGTCGTTTGTCTACAATGATTGCCTCTGCGGGAAGCCACTCAAAGCTTGCTAA 1110 0.5505 MGGFWLLQATTVTVLLLAVSTAVVHSCPPSDRAALLAFKEALHEPKFGIFNSWTGADCCHKWYGVSCDRETGRVADINLRGEAEEPIFERAHRTGYMTGYISPAICKLARLSSITVADWKGISGEIPRCITSLPFLRIIDLIGNRISGTIPYDIGRLHRLTVLNVADNAISGRIPPSLVNLSSLMHLDLRNNRISGPIPRDFGRLQMLSRALLSGNLLSGPIPGSISHIYRLADLDLSRNLVSGPIPESLGKMAVLSTLNLDMNKLTGPIPMSLFSSGISDLNLSRNSLEGNIPDMFGVRSYFTVLDLSYNNLKGAIPKSMSSASFIGHLDLSHNHLCGPIPVGSPFDHLEASSFVYNDCLCGKPLKAC. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08971 369 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 98 367 - -
Seca4g08971 369 SUPERFAMILY L domain-like 26 367 - -
Seca4g08971 369 FunFam Nuclear pore complex protein NUP107 29 199 - -
Seca4g08971 369 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Seca4g08971 369 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 200 278 - -
Seca4g08971 369 Gene3D Ribonuclease Inhibitor 24 93 IPR032675 -
Seca4g08971 369 Pfam Leucine rich repeat 280 337 IPR001611 GO:0005515
Seca4g08971 369 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515
Seca4g08971 369 Gene3D Ribonuclease Inhibitor 94 369 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08971 Seca-Chr4 213774238 213775347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08971 69 369 Receptor kinase-like Gene Family AT5G46330 36.808 2.87e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08971 - - gmx:100804739 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03746 4 65639159 65640367 Seca4g08971 4 213774238 213775347 PCT