Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03746 ATGGCACTAGTGACCCTAGTAGCACTTAGAGCCTTACCCGTTGAGTCATGCCCTCCCTCTGAATGGGCAGCACTCATGGCCTTCAAGGCAGCTCTCAAAGAACCATACTTCGGAATCTTCCATTCATGGAGAGGCACCAACTGCTGCTACCACTGGTACGGCGTGAGCTGCGACCCCACCACACGGCGCGTGGCCGAGATCACCCTCCGCGGCCTCACTGTCCGCGACAACCGCACCAGAACCGCAGGATACATGACCGGACACATCTCCCCATCAATCTGCAACCTCACGCAACTCTCCAGCATCACAATCTCAGACTGGAAGGGCATTTCAGGAATTATCCCTCGCTGCATCACAACCCTCCGTTTTCTCCAAACCATTGACCTCTCCGGGAACTTCATCTCCGGCAATGTTCCCTGGGACATAGGGCGACTCACCCAGCTTACGATGCTCAACCTCGCAGACAATCACATCTCTGGAAGGATCCCAATGACGCTAGTGAACCTCTCCAACCTCATGCAATTGGATCTCCGTAACAACGCCATTGAGGGCCCCATTCCATGGAACTTCGGCCGTCTCACAAAACTGAACCGGGCCTTACTCACCCACAACCGGATCACCGGTTCGATCCCGAGTTCAATTTCGAGTATTTACGGGCTGGCTGACCTGGACCTCTCGTTGAATCGGTTATCCGGTTCGATTCCGGCTTCGCTGGGCCGAATGCCGGTTCTGGACTCGCTGAACCTGAAGTATAATAACTTGTCGGGGAAGATTCCGGGGACGCTGTTGGCTTCGAGAATGAGCCATTTGGATTTGAGTAGAAACGCGTTGAGTGGGAACATACCGAACGTTTTTGGAGCAAAATCGTATTTCATAAACCTTGATTTGTCGCATAACAAGTTGACCGGTTTTGTTGCTAAGTCAATGGCGTTTGCCTGTTACATTGGCCACGTGGACTTGAGTCATAACCGTCTCTGTGCCCGATTCCACGTGGTCCGCCCTTCAATCATCTTCCGCCGCTGTCGTTCCAAAACAATCGGTGCCTTTGTGGGAAGCCACTTAAACCCTGCACTTATCATCACAAGTGAATTATATCTAATTCTAAATATAAAATATTATGTTGTTGTGTGCTTAAGAAAAAGAAAAAGGGTGATGTTTTATCTTTTGGCATCATCCTTGCATGCTTTCAGCTTTTTGAATGGTATTTGA 1209 0.5021 MALVTLVALRALPVESCPPSEWAALMAFKAALKEPYFGIFHSWRGTNCCYHWYGVSCDPTTRRVAEITLRGLTVRDNRTRTAGYMTGHISPSICNLTQLSSITISDWKGISGIIPRCITTLRFLQTIDLSGNFISGNVPWDIGRLTQLTMLNLADNHISGRIPMTLVNLSNLMQLDLRNNAIEGPIPWNFGRLTKLNRALLTHNRITGSIPSSISSIYGLADLDLSLNRLSGSIPASLGRMPVLDSLNLKYNNLSGKIPGTLLASRMSHLDLSRNALSGNIPNVFGAKSYFINLDLSHNKLTGFVAKSMAFACYIGHVDLSHNRLCARFHVVRPSIIFRRCRSKTIGAFVGSHLNPALIITSELYLILNIKYYVVVCLRKRKRVMFYLLASSLHAFSFLNGI. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03746 402 Pfam Leucine rich repeat N-terminal domain 20 58 IPR013210 -
Seca4g03746 402 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 86 378 - -
Seca4g03746 402 SUPERFAMILY L domain-like 16 326 - -
Seca4g03746 402 FunFam Nuclear pore complex protein NUP107 19 188 - -
Seca4g03746 402 Gene3D Ribonuclease Inhibitor 16 332 IPR032675 -
Seca4g03746 402 Pfam Leucine rich repeat 200 254 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03746 Seca-Chr4 65639159 65640367 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03746 85 340 Receptor kinase-like Gene Family AT3G11080 27.333 1.53e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03746 - - gmx:100778852 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03746 4 65639159 65640367 Seca4g03746 4 65639159 65640367 ECH
Seca4g03746 4 65639159 65640367 Seca4g08971 4 213774238 213775347 PCT