Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08930 ATGAGGTTTTTCATTGTCAACCAAGTGTTCTTTGATCAACCATACCCTCTCCAACCTAGATGCAGAATAGGAGCAACTCAACGTCTTCGTCAAAATGGTCTGCTTACTGCTGATACAATCAACAAAGCCAATGAAGAAACCATCAAAAAGTTGATTTACCCTGTTGGGTTTTATACAAGGAAAGCCAGTAACTTGAAGAAAGTTGCGCATATTTGTCTAATGAAGTATAATGGAGACATACCTGGCTCAATTGAGGAACTTCTCTTACTTCCAGGCGTAGGTCCTAAGATTGCTCATTTGGTTATGATTGTTGGGTGGAACAATGTCCAAGGGATATGTGTAGATACTCACGTCCACCGCATTTGTAATCGGCTTGGATGGGTTTCGAGATCAGGCACAAAACAGAAAACTTTGACACCAGAAGAAACAAGAAAGGCACTGCAGCGGTGGCTTCCGAGGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACGGACAATTTGTACTCCTCTACGGCCTCACTGTGGAGAGTGTGGTGTGAGTAGGTTCTGCCCATCAGCGTTCAAGGAGACTTCAAGTCCATCTTCCAAGGCCAATAAATCTGAACTGAACAAGAAGTTAAAGGATAAGCTTTAA 645 0.4264 MRFFIVNQVFFDQPYPLQPRCRIGATQRLRQNGLLTADTINKANEETIKKLIYPVGFYTRKASNLKKVAHICLMKYNGDIPGSIEELLLLPGVGPKIAHLVMIVGWNNVQGICVDTHVHRICNRLGWVSRSGTKQKTLTPEETRKALQRWLPREEWVPINPLLVGFGRTICTPLRPHCGECGVSRFCPSAFKETSSPSSKANKSELNKKLKDKL. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08930 214 FunFam Endonuclease III 18 108 - -
Seca4g08930 214 Gene3D Hypothetical protein; domain 2 21 103 - -
Seca4g08930 214 Pfam HhH-GPD superfamily base excision DNA repair protein 25 148 IPR003265 GO:0006284
Seca4g08930 214 FunFam Endonuclease III homolog 103 193 - -
Seca4g08930 214 Pfam Helix-hairpin-helix motif 75 102 IPR000445 GO:0003677
Seca4g08930 214 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 24 204 - -
Seca4g08930 214 CDD ENDO3c 23 167 IPR003265 GO:0006284
Seca4g08930 214 SUPERFAMILY DNA-glycosylase 23 194 IPR011257 GO:0003824|GO:0006281
Seca4g08930 214 MobiDBLite consensus disorder prediction 193 214 - -
Seca4g08930 214 ProSitePatterns Endonuclease III family signature. 78 107 IPR004036 -
Seca4g08930 214 SMART ccc3 170 190 IPR003651 GO:0051539
Seca4g08930 214 Gene3D - 104 193 IPR023170 -
Seca4g08930 214 SMART endo3end 17 169 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08930 Seca-Chr4 212798350 212800969 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08930 K10773 - gmx:100805799 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03701 4 64671447 64676933 Seca4g08930 4 212798350 212800969 PCT