Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03701 ATGTGGGTCGTTTGGGTCACTCCTTCTTGGTTTGGTTTTGGGAGAATCAAAGTGTCGTTGATCATGTCTGAGACAAGACGACGCTTTTACAGAGCCCCTCTCTCCAATAATGCCGAAGCCTCCGACTCATCGCACGGCGCTTCAGTGTCCAAAGTTCGTGTCTTTGTGAGGAGAAACAAGAGAGCCAAAGGAATGACCGTGGGACTTCAAGAAAAGGATCATCTACCCTTAACCCAGGACCAGAAAAAGTTTTGTCTACCTGAAATCGAAGACTTTGCGTACAGTGGAGCAAATGAATCGACTCAGTGTAGAAAATCAGAAATGAGTTCAGATGTGACTCCAGTGGAAAATGAAGTTGCTTGTCCAACTCCTGGTGGTGAACCACCTACTCACTGGGAAAAGATGCTTGAGGGGATTCAGAAAATGAGATGTTCTGCAGATGCACCAGTAGACACTATGGGATGTGAGAAAGCTGGTGATACTCTACCTCCTAAGGAAAGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCAAGCCAAACCAAGGATCATGTTACTCATGGAGCAATCCAACGTCTCCTTCAAAATGATCTGCTTACTGCTGATGCAATCAACAATGCTGATGAAGAAACCATCAAAAAGTTGATTTACCCTGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAGTATGATGGAGACATACCTAGCTCAATTGAGCAATTACTTTCACTTCCAGGCATAGGTCCTAAAATGGCTCATTTGGTTATGAATGTTGGATGGGATAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGGCTTGGGTGGGTGTCAAGATTGGGCACAAAACAGGTTCCTTTAAGTTTGGTGGCATCATATTTTATGTTTTAG 936 0.4274 MWVVWVTPSWFGFGRIKVSLIMSETRRRFYRAPLSNNAEASDSSHGASVSKVRVFVRRNKRAKGMTVGLQEKDHLPLTQDQKKFCLPEIEDFAYSGANESTQCRKSEMSSDVTPVENEVACPTPGGEPPTHWEKMLEGIQKMRCSADAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDHVTHGAIQRLLQNDLLTADAINNADEETIKKLIYPVGFYTRKATNLKKIANICLMKYDGDIPSSIEQLLSLPGIGPKMAHLVMNVGWDNVQGICVDTHVHRICNRLGWVSRLGTKQVPLSLVASYFMF. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03701 311 Pfam Helix-hairpin-helix motif 239 267 IPR000445 GO:0003677
Seca4g03701 311 FunFam Endonuclease III-like protein 1 164 268 - -
Seca4g03701 311 ProSitePatterns Endonuclease III family signature. 242 271 IPR004036 -
Seca4g03701 311 Gene3D - 268 307 IPR023170 -
Seca4g03701 311 SMART endo3end 177 310 IPR003265 GO:0006284
Seca4g03701 311 Pfam HhH-GPD superfamily base excision DNA repair protein 173 295 IPR003265 GO:0006284
Seca4g03701 311 CDD ENDO3c 169 298 IPR003265 GO:0006284
Seca4g03701 311 MobiDBLite consensus disorder prediction 108 129 - -
Seca4g03701 311 Gene3D Hypothetical protein; domain 2 159 267 - -
Seca4g03701 311 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 73 295 - -
Seca4g03701 311 SUPERFAMILY DNA-glycosylase 140 294 IPR011257 GO:0003824|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03701 Seca-Chr4 64671447 64676933 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03701 K10773 - gmx:100818398 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03701 4 64671447 64676933 Seca4g03701 4 64671447 64676933 ECH
Seca4g03701 4 64671447 64676933 Seca4g08930 4 212798350 212800969 PCT