Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08917 ATGCCAACTATTTTGCTTAGGATTTTCCTTCTTTACAACCTTCAAAATTCATTTCTCCTTTGTCTTGTCCTCAAAAAGCTCAAGGCCTTCCTCCCCCCTTCTTGGTTCCCCCATCAAACCAATCTCATCAAAACCACCACTACACCCTCCTCTTCAAGGGCCCTTATTATTGCCAAGAGAATAATAATGGACCCCAATGAGCTCAAGCGCGTTTTTCAGATGTTTGATCGCAATGGGGATGGCCGAATCACCCAGAAGGAGCTAAGCGATTCGCTGGAGAATTTGGGCATTTTCATCCCGGCCAAGGATCTGACACAGATGATTGAGAAAATCGATGTTAACGGAGATGGGTGTGTGGACATTGATGAGTTTGGTGAGTTGTACCAATCCATTATGGATGAATGTGATGAAGAGGAGGACATGAAGGAGGCTTTCAACGTCTTTGACCAAAACGGGGATGGATTCATCACCGTTGATGAGTTGAGATCAGTTTTGGAATCTCTTGGGCTAAAACAAGGAAGAACGGTCGAGGATTGCAAGAAGATGATCATGAAGGTGGATGTCGATGGAGATGGGATGGTGGATTACAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTTAGTGCTCTAAGTTAA 639 0.446 MPTILLRIFLLYNLQNSFLLCLVLKKLKAFLPPSWFPHQTNLIKTTTTPSSSRALIIAKRIIMDPNELKRVFQMFDRNGDGRITQKELSDSLENLGIFIPAKDLTQMIEKIDVNGDGCVDIDEFGELYQSIMDECDEEEDMKEAFNVFDQNGDGFITVDELRSVLESLGLKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALS. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08917 212 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Seca4g08917 212 CDD EFh 140 204 IPR002048 GO:0005509
Seca4g08917 212 FunFam calmodulin-like protein 3 134 207 - -
Seca4g08917 212 ProSitePatterns EF-hand calcium-binding domain. 149 161 IPR018247 -
Seca4g08917 212 ProSiteProfiles EF-hand calcium-binding domain profile. 174 209 IPR002048 GO:0005509
Seca4g08917 212 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Seca4g08917 212 ProSitePatterns EF-hand calcium-binding domain. 112 124 IPR018247 -
Seca4g08917 212 SMART efh_1 67 95 IPR002048 GO:0005509
Seca4g08917 212 SMART efh_1 178 206 IPR002048 GO:0005509
Seca4g08917 212 SMART efh_1 103 131 IPR002048 GO:0005509
Seca4g08917 212 SMART efh_1 140 168 IPR002048 GO:0005509
Seca4g08917 212 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 136 204 - -
Seca4g08917 212 ProSiteProfiles EF-hand calcium-binding domain profile. 99 134 IPR002048 GO:0005509
Seca4g08917 212 SUPERFAMILY EF-hand 66 206 IPR011992 -
Seca4g08917 212 Gene3D - 52 131 - -
Seca4g08917 212 Gene3D - 132 206 - -
Seca4g08917 212 ProSiteProfiles EF-hand calcium-binding domain profile. 136 171 IPR002048 GO:0005509
Seca4g08917 212 FunFam Calmodulin-like protein 3 63 132 - -
Seca4g08917 212 Pfam EF-hand domain pair 138 204 IPR002048 GO:0005509
Seca4g08917 212 Pfam EF-hand domain pair 67 129 IPR002048 GO:0005509
Seca4g08917 212 ProSitePatterns EF-hand calcium-binding domain. 187 199 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08917 Seca-Chr4 212645572 212646210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08917 5 210 EF-hand Containing Proteins AT2G43290 66.197 3.72e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08917 K13448 - gmx:100527487 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03688 4 64411652 64412101 Seca4g08917 4 212645572 212646210 PCT