Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03688 ATGGACCCCAATGAGCTAAAACGCGTATTCCAAATGTTTGATCGAAATGGGGATGGTCGAATCACAAAGAAGGAGTTAACAGACTCATTGGAGAACTTGGGCATCTTCATCCCTGACAAGGAATTGACGCAGATGATTGAAAAGATCGATGTGAACGGAGATGGGTGCGTGGACATGGACGAGTTTGGTGAATTATACCAATCCATCATGGACGAACGTGATGAAGAGGAAGACATGAGGGAGGCATTCAACGTCTTTGATCAAAATCGTGATGGCTTCATCACCGTTGATGAACTCAGAGCGGTTTTGTCCTCTTTGGGCCTCAAACAGGGAAGAACTGTTGAAGAATGCAAAAGGATGATTATGAAGGTTGATGTTGATGGAGATGGGATGGTTAATTACAAGGAGTTCAAGCAAATGATGAAAGGGGGAGGCTTCAGTGCTCTTTAG 450 0.4422 MDPNELKRVFQMFDRNGDGRITKKELTDSLENLGIFIPDKELTQMIEKIDVNGDGCVDMDEFGELYQSIMDERDEEEDMREAFNVFDQNRDGFITVDELRAVLSSLGLKQGRTVEECKRMIMKVDVDGDGMVNYKEFKQMMKGGGFSAL. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03688 149 PRINTS Parvalbumin signature 65 83 - -
Seca4g03688 149 PRINTS Parvalbumin signature 124 137 - -
Seca4g03688 149 PRINTS Parvalbumin signature 87 103 - -
Seca4g03688 149 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Seca4g03688 149 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Seca4g03688 149 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 76 142 - -
Seca4g03688 149 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Seca4g03688 149 FunFam Calmodulin-like protein 5 1 74 - -
Seca4g03688 149 Gene3D - 2 67 - -
Seca4g03688 149 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Seca4g03688 149 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Seca4g03688 149 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Seca4g03688 149 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Seca4g03688 149 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Seca4g03688 149 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Seca4g03688 149 Gene3D - 68 144 - -
Seca4g03688 149 SUPERFAMILY EF-hand 4 144 IPR011992 -
Seca4g03688 149 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Seca4g03688 149 SMART efh_1 41 69 IPR002048 GO:0005509
Seca4g03688 149 SMART efh_1 5 33 IPR002048 GO:0005509
Seca4g03688 149 SMART efh_1 78 106 IPR002048 GO:0005509
Seca4g03688 149 SMART efh_1 116 144 IPR002048 GO:0005509
Seca4g03688 149 CDD EFh 82 142 IPR002048 GO:0005509
Seca4g03688 149 FunFam calmodulin-like protein 3 75 145 - -
Seca4g03688 149 CDD EFh 5 62 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03688 Seca-Chr4 64411652 64412101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03688 1 149 EF-hand Containing Proteins AT1G05990 80.000 8.17e-81 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03688 K13448 - zju:107422102 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03688 4 64411652 64412101 Seca4g03688 4 64411652 64412101 ECH
Seca4g03688 4 64411652 64412101 Seca4g08917 4 212645572 212646210 PCT