Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08870 ATGAAGAACGATGATGACAACAACAACAACCGGGGAGAACATCACACCAACAAAGACACTAGTACCATAGGAATCCTTGATTCCCGATTCAATCAGACCCTCAGAAGTGTTCAAGGGTTACTCAAGGGTCGTAGCATTCCTGGTAAAATATTATTGAGTCAGAGGGTAGATCCCGTAGATAACTCAATGTTATCTTCGCCAACTTATAAAAGGAGCTCCTCAAACAGTGAAACTGGCACAAGTGATCACACATCTGAGACAGCAGAGGAAGAAGCTCACAGTACAAGCAAACCACATGGTATTCGCAATGAGAATAAGTTAAAAATATCAATCTCCCATGTTGAGAGCCAAGCTGAAGAAGTCCGGAAATCTTCCATGGGTGCCAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCAACAAGGTGCTTTCTGGGACAATGGCTATGTTAGATAAATTGCGTGAATTAGCTTGGAGTGGTGTTCCCGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCGCCTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGGAAGCGCCTTGAGTATCTTGATTACATTTCTCAGTATTATGATATTCCTGATACAGAACGCTCAGATGATGAGATCAACATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTACCTGATGTTTTATTCTTCCAGCAACAGCAAGTTCAGAAATCACTGGAGCGAATTCTTTATACATGGGCCATTCGGCATCCTGCAAGTGGATATGTTCAAGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTATCAGAATATTTAGAAGGGAGCATAGATAATTGGTCAGTGTCTGATTTATCTTCAGATCAAATCTCTAATGTAGAGGCTGACTGCTATTGGTGCTTGTCAAAATTGCTTGATGGTATGCAAGACCATTACACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAAGAATTGGTCCGGAGGATTGATGATCCTGTTTCAAGCCATATGGAGAATCAGGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTCAATCTTGTCACCCGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGGTGAGCCATCATACTTTTGGCCTTTTTACTAATATAATTTGTATGAAGAATTTAACTTATATGCATTGTCAATCAGTGGTCAGACAAACTCCAGAAGCTTGA 1314 0.4102 MKNDDDNNNNRGEHHTNKDTSTIGILDSRFNQTLRSVQGLLKGRSIPGKILLSQRVDPVDNSMLSSPTYKRSSSNSETGTSDHTSETAEEEAHSTSKPHGIRNENKLKISISHVESQAEEVRKSSMGARATDSARVMKFNKVLSGTMAMLDKLRELAWSGVPDYMRPTVWRLLLGYAPPNSDRREGVLRRKRLEYLDYISQYYDIPDTERSDDEINMLRQIAVDCPRTVPDVLFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSIDNWSVSDLSSDQISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMENQGLEFLQFAFRWFNCLLIREIPFNLVTRLWDTYLAEGDALPDFLVYIFASFLLTVSHHTFGLFTNIICMKNLTYMHCQSVVRQTPEA. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08870 437 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 323 407 IPR035969 -
Seca4g08870 437 ProSiteProfiles TBC/rab GAP domain profile. 160 387 IPR000195 -
Seca4g08870 437 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g08870 437 FunFam TBC domain containing protein 190 321 - -
Seca4g08870 437 Gene3D - 322 435 - -
Seca4g08870 437 FunFam TBC1 domain family member 134 186 - -
Seca4g08870 437 Pfam Rab-GTPase-TBC domain 164 402 IPR000195 -
Seca4g08870 437 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 138 347 IPR035969 -
Seca4g08870 437 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g08870 437 MobiDBLite consensus disorder prediction 83 104 - -
Seca4g08870 437 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 197 321 - -
Seca4g08870 437 Gene3D - 137 188 - -
Seca4g08870 437 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 104 406 - -
Seca4g08870 437 MobiDBLite consensus disorder prediction 59 82 - -
Seca4g08870 437 MobiDBLite consensus disorder prediction 59 104 - -
Seca4g08870 437 SMART tbc_4 157 413 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08870 Seca-Chr4 211626885 211632807 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08870 K20360 - gmx:100785695 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03647 4 63043836 63049112 Seca4g08870 4 211626885 211632807 PCT