Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03647 ATGAACAAGCGCCAAGAAGATGAACGTAACATAGCTACACCTACACTCGACTCCAGATTCAACCAGACCCTCAGACATGTTCAAGGGTTAATCAAAGGTCGTAGCATGCCTGGTAAAATATTATTGAGTCGGTGGTCAGACTCACCTGATAACTCAAACTCAAAGGTATCCACACCATATTACAAAAGGAGCTTCTCACTCAATGATGCTGGCACAAGTGATCACGCATCTGGAGCAGTAGAGGAGGAAGTTCAGAGTACAAGTAAACCAATTAGTATTGTCAATGTCAGTAAGTTAAAAATGTCAACCTCCTTTATTGAGAGAGAGAGCCCATCTGAAGAAGCCCGCAAGTGTACCATGAGTGCTAGAGCTATGGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCTGGGCCAGTGGTTATATTAGACAAGCTGCGTGAATTAGCCTGGAGTGGAGTTCCAGAGTATATGCGTCCTAAAGTGTGGAGGCTTCTCCTGGGATATGAACCACCTAATTCAGATAGAAGGGAGCGAGTTCTAAGATGGAAGCGCCTAGAGTATCTTGATTGCATTTCTCACTATTATGATATTCCCGATACAGAACGTTCAGATGATGAGATCAACATGCTTCGCCAGATAGCTGTTGACTGCCCAAGAACTGTACCTGATGTTCCATTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGCATTCTATATGCATGGGCCATTCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCTTATCAGAATATTTACAAGGGGGTATAGATGATTGGTCAATGTCTGATTTATCTTCAGATAAAATCTCTAATATAGAGGCTGACTGCTACTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAGGACCATTACACATTTGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAGGGAATTGGTCAGGAGGATCAATGAGCCTGTTTCACGACATATGGATGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGTGAGATACCCTTCCATCTTGTCACACGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGTTTCCTTCTAACGTGGTCAGACAAGCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCCACTCAAAACTGGACTCACCAGGAGCTCGAGATGGTGCTTTCCCGGGCATTTATGTGGCACAGCATGTTCAACAGCTCTCCGAGCCATTTAGCTAGCTGA 1356 0.4344 MNKRQEDERNIATPTLDSRFNQTLRHVQGLIKGRSMPGKILLSRWSDSPDNSNSKVSTPYYKRSFSLNDAGTSDHASGAVEEEVQSTSKPISIVNVSKLKMSTSFIERESPSEEARKCTMSARAMDSARVMKFTKVLSGPVVILDKLRELAWSGVPEYMRPKVWRLLLGYEPPNSDRRERVLRWKRLEYLDCISHYYDIPDTERSDDEINMLRQIAVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYLQGGIDDWSMSDLSSDKISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLRELVRRINEPVSRHMDDQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLPTQNWTHQELEMVLSRAFMWHSMFNSSPSHLAS. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03647 451 ProSiteProfiles TBC/rab GAP domain profile. 154 381 IPR000195 -
Seca4g03647 451 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 192 315 - -
Seca4g03647 451 FunFam TBC1 domain family, member 22B 185 315 - -
Seca4g03647 451 Gene3D - 316 451 - -
Seca4g03647 451 Gene3D - 131 182 - -
Seca4g03647 451 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 133 341 IPR035969 -
Seca4g03647 451 Pfam Rab-GTPase-TBC domain 159 402 IPR000195 -
Seca4g03647 451 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 317 439 IPR035969 -
Seca4g03647 451 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 109 424 - -
Seca4g03647 451 SMART tbc_4 151 407 IPR000195 -
Seca4g03647 451 FunFam TBC domain containing protein 316 451 - -
Seca4g03647 451 FunFam TBC1 domain family member 128 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03647 Seca-Chr4 63043836 63049112 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03647 K20360 - gmx:100819281 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03647 4 63043836 63049112 Seca4g03647 4 63043836 63049112 ECH
Seca4g03647 4 63043836 63049112 Seca4g08870 4 211626885 211632807 PCT