Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08866 ATGATGAGGATGGAAAACAAGTTACTAAGCATTCTTGTAGCAGGGCTTGCAATGGCCTTTGTTATGATGATGGTGTCCAAAAATGTGAGTGCTCAAAATTGTGGGTGTGCTGCAGGGTTATGTTGCAGCCAATATGGGTATTGTGGGGAAGGTGATGCCTACTGTGGCACAGGGTGCAGAGAGGGTCCTTGTTATGTGAGCCAAAGCCCACCAAACAATGATGTTAATGTAGCTGACATCGTTACACAAGAATTCTTCAATAGTATAATTGATCAGGCTGACTCTGGTTGTGTAGGGAAGAGTTTCTACTCAAGAGATGCTTTTCTGAATGCTCTTAATTCCTACAATCAATTTGGTAGAATTGGTTCTGTGGATGACTCCAAGCGTGAGATTGCAGCTGCTTTTGCCCATTTCACACATGAAACTGGACATTTTTGTTATATTGAAGAGATTGATGGTGCATCAAAGGACTACTGTGATGAAAAAAATACAGAGTACCCATGTGCCCCTAACAAAGGGTACTATGGGCGTGGACCGATCCAATTGTCTTGGAACTTCAACTATGGACCAGCGGGGAAGGACAATGGTTTTGATGGATTGAACTCTCCTGAGACAGTGGCCAATGATGCTGTGGTGTCCTTCAAGACAGCCTTATGGTACTGGATGCGACATGTGCGCCCTGTTATCAACCAAGGCTTTGGTGCAACCATTAGAGCCATTAATGGCCAACTTGAATGTGATGGTGCAAACCCCACCACAGTTCAGAAACGCATTGGTTACTATACTCAATACTGTAGTCAATTGGGTGTTGCTCCTGGTGATAATCTTAGTTGCTAA 837 0.4385 MMRMENKLLSILVAGLAMAFVMMMVSKNVSAQNCGCAAGLCCSQYGYCGEGDAYCGTGCREGPCYVSQSPPNNDVNVADIVTQEFFNSIIDQADSGCVGKSFYSRDAFLNALNSYNQFGRIGSVDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEKNTEYPCAPNKGYYGRGPIQLSWNFNYGPAGKDNGFDGLNSPETVANDAVVSFKTALWYWMRHVRPVINQGFGATIRAINGQLECDGANPTTVQKRIGYYTQYCSQLGVAPGDNLSC. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08866 278 ProSitePatterns Chitin recognition or binding domain signature. 36 55 IPR018371 GO:0008061
Seca4g08866 278 CDD ChtBD1 36 59 - -
Seca4g08866 278 Gene3D - 28 66 IPR036861 GO:0008061
Seca4g08866 278 PANTHER CHITINASE-RELATED 13 278 - -
Seca4g08866 278 ProSitePatterns Chitinases family 19 signature 2. 212 222 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca4g08866 278 CDD chitinase_GH19 81 278 - -
Seca4g08866 278 PIRSF Endochitinase 2 278 IPR016283 GO:0004568|GO:0005975
Seca4g08866 278 Gene3D Endochitinase, domain 2 149 206 - -
Seca4g08866 278 ProSitePatterns Chitinases family 19 signature 1. 97 119 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca4g08866 278 FunFam Class IV chitinase 28 78 - -
Seca4g08866 278 SMART ChitinBD_3 33 64 IPR001002 GO:0008061
Seca4g08866 278 SUPERFAMILY Lysozyme-like 76 278 IPR023346 -
Seca4g08866 278 Pfam Chitin recognition protein 31 64 IPR001002 GO:0008061
Seca4g08866 278 Gene3D - 75 278 - -
Seca4g08866 278 FunFam Endochitinase (Chitinase) 149 208 - -
Seca4g08866 278 SUPERFAMILY Plant lectins/antimicrobial peptides 29 69 IPR036861 GO:0008061
Seca4g08866 278 Pfam Chitinase class I 231 278 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca4g08866 278 Pfam Chitinase class I 80 224 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca4g08866 278 FunFam Endochitinase PR4 70 157 - -
Seca4g08866 278 ProSiteProfiles Chitin-binding type-1 domain profile. 31 66 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08866 Seca-Chr4 211591253 211593094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08866 4 278 Glycoside Hydrolase AT3G54420 68.000 7.32e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08866 K01183 - gmx:100776582 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08866 4 211591253 211593094 Seca4g08866 4 211591253 211593094 ECH
Seca4g03636 4 62834780 62835776 Seca4g08866 4 211591253 211593094 PCT