Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03636 ATGAGGATGTTACTAAACACTCGTGCTATAGGATTTGTGGTAGCCTTTGTCACAATGATAATGGTGCCCAAATATGTGAGTGCCCAAAGCGATGTTTCTGTAGCTGACATTGTCACACCAGAATTCTTCAATGGCATAATTGATGAGGCTGATGCTAGTTGCGCAGGAAAGAACTTCTACTCACGAGATGCTTTCCTCAATGCCCTCAATTCCTATAATCAGTTTGGTAGGCTCGACACTTTAGATGACTCTAAACGTGAGATTGCAGCTGCTTTTGCCCATTTCACCCATGAAACAGGACATTTTTGCTACATTGAAGAGATTGATGGTGCCTCAAGGGACTATTGCGACGAAACCAAAACCGAATACCCATGTGCTGCTAACAAAGGCTACTATGGGCGTGGACCCATCCAACTATCATGGAACTTCAATTACGGACCAGCAGGGCAGAGCATTGGTTTCGATGGATTGAACGCTCCAGAGACTGTGGCCAATGACCCTGTAGTGTCCTTCAAGACAGCGTTGTGGTATTGGATGCAACATGTGCGCCCTGTCATTAACCAGGGCTTTGGCGCAACCATTAGAGCTATCAATGGTCAACTTGAATGTGATGGTGCCAACCCCAAACTGTTCAGGCTCGCGTTAATTACTACACCCAATATTGTTCACAATTGGGTGTTGCTCCTGGTGATAACCTCACCTGTTAACTTATTTTTAGTGGCTGTATACATATCCATTACTGGTACCATTACCATATGA 759 0.4466 MRMLLNTRAIGFVVAFVTMIMVPKYVSAQSDVSVADIVTPEFFNGIIDEADASCAGKNFYSRDAFLNALNSYNQFGRLDTLDDSKREIAAAFAHFTHETGHFCYIEEIDGASRDYCDETKTEYPCAANKGYYGRGPIQLSWNFNYGPAGQSIGFDGLNAPETVANDPVVSFKTALWYWMQHVRPVINQGFGATIRAINGQLECDGANPKLFRLALITTPNIVHNWVLLLVITSPVNLFLVAVYISITGTITI. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03636 252 Gene3D - 32 213 - -
Seca4g03636 252 PANTHER CHITINASE-RELATED 29 207 - -
Seca4g03636 252 FunFam Endochitinase PR4 17 114 - -
Seca4g03636 252 Pfam Chitinase class I 37 181 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca4g03636 252 FunFam Endochitinase (Chitinase) 106 165 - -
Seca4g03636 252 SUPERFAMILY Lysozyme-like 33 208 IPR023346 -
Seca4g03636 252 CDD chitinase_GH19 38 208 - -
Seca4g03636 252 ProSitePatterns Chitinases family 19 signature 1. 54 76 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca4g03636 252 ProSitePatterns Chitinases family 19 signature 2. 169 179 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca4g03636 252 Gene3D Endochitinase, domain 2 106 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03636 Seca-Chr4 62834780 62835776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03636 32 207 Glycoside Hydrolase AT3G54420 79.545 1.71e-105 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03636 K01183 - gmx:100527091 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03636 4 62834780 62835776 Seca4g03636 4 62834780 62835776 ECH
Seca4g03636 4 62834780 62835776 Seca4g08866 4 211591253 211593094 PCT