Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08714 ATGGACAGAAACCATTCCCGGAGGCAGGTTGCTGCAATGAAACAGTCCCTCTTTGATCAGGGATATCTGGATGAGCAGTTTATCCAACTTGAAGAATTGCAGGATGATGCTAACCCTAACTTTGTTGAGGAAATTGTGACTCTTTATTATCGAGATTCATCAAGGCTTATCTCAAATTTGGAGCAGACACTCAGGGAGAGGAACCCAATGGATTTCAACAAGCTGGACACAATTATGCACCAGTTTAAAGGAAGCAGCTCAAGCATTGGAGCCAAAAAGGTGAAAGCAGAATGCACTCTGTTTAGGGAATATTGCAGGGCAGGAAATGCTGAAGGATGTAGGAAGAGCTTCCAACAAATGAAGAAAGAATATGCAACACTGAGAAAGAAACTTGAAACTTATTTTCAGCTGGCTAGGCAAGCTGGGCCACTGGAGAGAGCATGTCGCCCCAAGTAA 456 0.4364 MDRNHSRRQVAAMKQSLFDQGYLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISNLEQTLRERNPMDFNKLDTIMHQFKGSSSSIGAKKVKAECTLFREYCRAGNAEGCRKSFQQMKKEYATLRKKLETYFQLARQAGPLERACRPK. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08714 151 FunFam Histidine-containing phosphotransfer protein 4 1 146 - -
Seca4g08714 151 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 7 140 IPR036641 GO:0000160
Seca4g08714 151 Gene3D HPT domain 2 145 IPR036641 GO:0000160
Seca4g08714 151 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 134 IPR008207 GO:0000160
Seca4g08714 151 Pfam Hpt domain 44 128 IPR008207 GO:0000160
Seca4g08714 151 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 6 143 IPR045871 GO:0000160|GO:0009927|GO:0043424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08714 Seca-Chr4 207577839 207579484 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08714 K14490 - gmx:100526849 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08714 4 207577839 207579484 Seca4g11856 4 259218897 259220681 ECH
Seca4g08714 4 207577839 207579484 Seca4g08714 4 207577839 207579484 ECH
Seca4g08714 4 207577839 207579484 Seca4g00681 4 11403318 11408540 ECH
Seca4g11856 4 259218897 259220681 Seca4g08714 4 207577839 207579484 PCT