Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08705 ATGGATTTCCGTGCCCCGCCGCCATCTCCGGTCGCTCCTTCCCGGCGGTCGTCGTCGCTCCCCAACGACGACGTTTTCAGCCACTTCTTGGAGACCTCACTCCGTCTCCCAAACCTTGCATTCCCCACAAACAAGCACCAACACCAACAAACACCACCTCCCAAGGTTGATTTTCGATCGTTATGTTTCGACGACGATCTCCGTCGCGTCGTTTCGGATTCTTTGGTAACTATCGGATGCTTCCAGCTTATCAACCATGGGATTCCACCTGACTTGATCACCTCCCTCTCGGAGGCAGCTGCCGTCGGAATCTTTCGAGTCCCGCCGGGAAAGCGAGCCGCCGCCACGAGATCGCCGGAGAAGCCCTGTGGATTTGAAGAATACGATGCGGAGGGAAGTGAGTTGAGTGAAGAGTTCGTTTGGTGTAGAGATGATGACTTAAACTTGAAAATGGAGCGAATTTGCCCAACTCCATATTCCAATTTTAGGGAGAAGATGGACACTCTTATGTCAAGAATAGAGAAGGTAGCTGAGAACATTTTGCCAATCATATTCAAAGATTTTCCCAAAATATTTGCAAATTATGTTGACATGATTCGTGGGCATGAACGTGGGACACTTTGTTGTGTCTACAAGCACAGCCCAGATAATATGTCAGGCCAATGGGCTAACTCTTTAAAGTATGATGTGTTTAGAATGCTGATTAGGGGAAGCGATTACTCTCATTCCTTGTGCTTGCATGTATGTGATGGGTCTTCAGAGTTTCATGTTTACTCCATGAAAGGCTGGCTCTCTTTCTTCCCAGAACAAGGTGCCCTTGTAATCACCGGTGGAGACCAAACCCAGATATTGAGTAATGGGCACTACAAGCACGTGATAGGAAGGCCAATATTTAAAGGTGAGAAAGAAGACATCATTTCAATGGCTTTTCTCTATTCTCCACAAAACACCAAGGACAATTTTCAAACCAATAGGGAAAGAACTGTTTCCCTAGGCCAGCAAGCCATATTGGCTATTATTTTTACCATTGTGTATCATGTCCTCATTTATCTCTACAAAATTTTTTGA 1068 0.4597 MDFRAPPPSPVAPSRRSSSLPNDDVFSHFLETSLRLPNLAFPTNKHQHQQTPPPKVDFRSLCFDDDLRRVVSDSLVTIGCFQLINHGIPPDLITSLSEAAAVGIFRVPPGKRAAATRSPEKPCGFEEYDAEGSELSEEFVWCRDDDLNLKMERICPTPYSNFREKMDTLMSRIEKVAENILPIIFKDFPKIFANYVDMIRGHERGTLCCVYKHSPDNMSGQWANSLKYDVFRMLIRGSDYSHSLCLHVCDGSSEFHVYSMKGWLSFFPEQGALVITGGDQTQILSNGHYKHVIGRPIFKGEKEDIISMAFLYSPQNTKDNFQTNRERTVSLGQQAILAIIFTIVYHVLIYLYKIF. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08705 355 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g08705 355 Coils Coil 159 179 - -
Seca4g08705 355 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 2 351 - -
Seca4g08705 355 Pfam non-haem dioxygenase in morphine synthesis N-terminal 56 134 IPR026992 -
Seca4g08705 355 Gene3D - 23 330 IPR027443 -
Seca4g08705 355 SUPERFAMILY Clavaminate synthase-like 38 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08705 Seca-Chr4 207311694 207315815 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08705 - - pvu:PHAVU_005G166600g 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08705 4 207311694 207315815 Seca4g08705 4 207311694 207315815 ECH
Seca4g11862 4 259285653 259287083 Seca4g08705 4 207311694 207315815 PCT