Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08426 ATGTCTGCTGCGGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGACCTTCCTCCTTCCCCTCCAGTTTCCAAGAGGCTTCGTTGTTCTTCCTCTCCAATTCGCCTTTCCCTTCCAACCCTCGTCGACCACCTTCGCTCGCTTTTTCCTCATATGGATGACCAGGTCCTCGAGAGGGCACTCCAAGAATGTGGCAACGATTTAGATGCTGCTATCAAGAGCCTGCACGGGCTGTGCTTGGGATCTGCTGATGAAAATTCTGCAATTGCTCCCCAACCTGAGGCTAACGTTGAGACAGGTACGGTTATAACTTCAGGTACATTGGAAGATAATGGGGATGCTTCTGCTTCTGGGAATCAGTCAGCTTCCAACAATCTTCCTGCAGATGGAGCAGAATGGATTGACTTGTTTGTCAGAGAAATGACTTGTGCTACTAATGTTGATGATGCCAGAGCCCGGGCTGCTAGACTGCTTGAGGTTCTAGAGAAATCGATCACCGCACATGCAAGCTCAGGGGCAACAACTGCTCTTCAAAGGGAAAATTTGATGCTGAAGGATCAAATTGAAGCCTTGACTAAGGAGAAAAATTGCTTTAAAAGTGCGTTTAGAATCCAGCTTGAACGGCTCTCAGATTATGAGGAAAAAAACCAAGAGTTGCAGCAGTTGAAGCAATTGGTGTCTCAATACCAGGAGCAGATCAGAACTCTTGAGGTGAATAACTATGCTTTACGAATGCATTTGAATCAGGCACAACAGTACAATCCTTTTCCTGGGCGTTTCCCTCCTGATGCCTTCTAA 795 0.4679 MSAAVCGSKRSFFEDLPPSPPVSKRLRCSSSPIRLSLPTLVDHLRSLFPHMDDQVLERALQECGNDLDAAIKSLHGLCLGSADENSAIAPQPEANVETGTVITSGTLEDNGDASASGNQSASNNLPADGAEWIDLFVREMTCATNVDDARARAARLLEVLEKSITAHASSGATTALQRENLMLKDQIEALTKEKNCFKSAFRIQLERLSDYEEKNQELQQLKQLVSQYQEQIRTLEVNNYALRMHLNQAQQYNPFPGRFPPDAF. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08426 264 ProSiteProfiles CUE domain profile. 36 82 IPR003892 GO:0043130
Seca4g08426 264 Gene3D - 39 79 - -
Seca4g08426 264 SUPERFAMILY UBA-like 38 81 IPR009060 GO:0005515
Seca4g08426 264 CDD CUE 40 74 - -
Seca4g08426 264 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 264 - -
Seca4g08426 264 Coils Coil 173 193 - -
Seca4g08426 264 MobiDBLite consensus disorder prediction 104 124 - -
Seca4g08426 264 Coils Coil 201 238 - -
Seca4g08426 264 Pfam CUE domain 40 73 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08426 Seca-Chr4 200965837 200968843 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08426 - - gmx:100815998 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08426 4 200965837 200968843 Seca4g08426 4 200965837 200968843 ECH
Seca4g12027 4 261100450 261104858 Seca4g08426 4 200965837 200968843 PCT