Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05147 ATGCAGTTATTTCACAAACCTACCAAAGCCCAGTCTCTGGTTAACTTCATTTTAGTCTCTTCTTCATTTTGTGTCCTTTATGTCCTTATATCAGTGCTATTCTTGGGAACATCGAAGCTAGTACATGTGCATTCTTCATCACAAGATGTGTCCACGCCCACCACTCTTGATCATCTTGTGTTTGGAATTGCTTCAAGTAAGAGTTCATGGTCCAAAAGAAAGGAGTATGTTAAGCTATGGTGGAAAACCAACAATGCAATGAGGGGATGTGTGTTTTTGGATAGCCTCCCAGAGGAAGAAAATGCTAGGAATGAGAATGATACTTCTCTTCCCCCTCTGTGTGTCTCTGAAGACACTTCACGGTTTCGCTACACTTGCAAGGGTGGATTGAGCTCAGCAATACGCGTTGCACGTGTTGTTAAAGAGACTATAGCACTGAACCATTCAGATGTGAGATGGTATGTGTTTGGAGATGATGACACTGTTTTCTTCCCAGAGAATTTGGTGAAGACTCTTTCTAAATATGATCATGGGCTTTGGTACTATATTGGTGCACACTCTGAGGTCTATGAGCAGAACCGGTTGTTTGGTTTTGGAATGGCTTTTGGTGGTGCTGGTTTTGCTATCAGTTCATCTCTGGCTAAAGTCTTGGCCAAGGTTTTTGATTCGTGTTTAGAAAGGTACCCTCATCTTTATGGAAGTGATGGCAGGGTGTACTCTTGCTTAGCAGAGCTTGGTGTGGGATTAACACATGAACCGGGTTTTCACCAGGTTGATTTGAGGGGAGATACCTTTGGCCTATTGGCTGCACATCCAGTAACTCCCTTGTTGTCCCTGCATCACCCGGATTACACAGATCCAATCTTTCCAAACATGACAACTACACAAGCTCTGAACCATTTATTTGAAGCTGTAAATGTTGATTCCCAGAGGATGCTACAACAAGCAATTTGCTATGACAGATGGTTCTCATGGACAATTTCAGTGTCATGGGGCTACGCTGTTCAGGTATTCCCGAACCACATTTTTTTGCCAGATGTTCTCAAGGTTCAAGAAACATTCAAACAATGGAAGAAAGGAAATATGTTGGCAAAAGCATATACTTTCAACACAAGAGAACATCACCCTGACCCGTGTAAGAGATCCACAGTTTTCTATCTTGATAAGGTGTTTTCTGGTAAGGATGGCATCATAAGCAGTTATAAGAAATCGTTTCAAAATTGCTCAAACGACATGTTATCTCCAAAGAAACTAGAAATGATCAAAGTGGTCACAGATAAGCTAGACCTTGGTATCAAACAGTTGCAGGCTCCAAGACGGCACTGTTGTGATGTATTGCCCTCTAGTGCTCGTGACCAACTGGAAATTGCAATCAGAGAATGCAGAGATGAGGAATTGATTTACATGCACTGA 1413 0.4211 MQLFHKPTKAQSLVNFILVSSSFCVLYVLISVLFLGTSKLVHVHSSSQDVSTPTTLDHLVFGIASSKSSWSKRKEYVKLWWKTNNAMRGCVFLDSLPEEENARNENDTSLPPLCVSEDTSRFRYTCKGGLSSAIRVARVVKETIALNHSDVRWYVFGDDDTVFFPENLVKTLSKYDHGLWYYIGAHSEVYEQNRLFGFGMAFGGAGFAISSSLAKVLAKVFDSCLERYPHLYGSDGRVYSCLAELGVGLTHEPGFHQVDLRGDTFGLLAAHPVTPLLSLHHPDYTDPIFPNMTTTQALNHLFEAVNVDSQRMLQQAICYDRWFSWTISVSWGYAVQVFPNHIFLPDVLKVQETFKQWKKGNMLAKAYTFNTREHHPDPCKRSTVFYLDKVFSGKDGIISSYKKSFQNCSNDMLSPKKLEMIKVVTDKLDLGIKQLQAPRRHCCDVLPSSARDQLEIAIRECRDEELIYMH. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05147 470 Gene3D - 46 309 - -
Seca4g05147 470 PANTHER FRINGE-RELATED 17 467 - -
Seca4g05147 470 FunFam Fringe-related protein-like 46 306 - -
Seca4g05147 470 Pfam Protein of unknown function, DUF604 192 443 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05147 Seca-Chr4 96149645 96152165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05147 13 435 Glycosyltransferase AT1G05280 54.734 5.81e-170 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05147 - - gmx:100813816 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05147 4 96149645 96152165 Seca4g05147 4 96149645 96152165 ECH
Seca4g05147 4 96149645 96152165 Seca4g05147 4 96149645 96152165 PCT
Seca4g05148 4 96165608 96169075 Seca4g05147 4 96149645 96152165 PCT