Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03467 ATGTGTGACACTTTGTCCACACCTATTATAGATCGACCTGTTAAAGGTATTGAGGCTGAATATTTGGAGGATGAAAAGAAGAAAAGGCTTGGGTCTTTAAAGAAGGTAGCAATCAGTGCTTCTTCTAAGTTCAAACATTCCTTTGCAAAGAAGGGGCGAAGGCACTGCAGGGTTATCTCTGTTGGTATTGAGGATGAACTTGATTCAGAAGAGTTGCAAGCAATAGATGCATTTCGCCAAGCACTTATCTTGGAAGAGCTATTACCCTCAAAACATGATGATCATCATATGATGCTAAGATTCTTGAGGGCAAGGAAGTATGACATTGAGAAAACAAAACAAATGTGGGCAGATATGCTCCAGTGGAGGAAGGAGTTTGGTGCTGATACCATCATGGAGGATTTTGAATTCAAGGAGATAGATGAAGTTCTAAAATACTACCCACAAGGACATCACGGAGTTGATAAGGATGGACAACCTGTATACATAGAAAGGTTGGGTCAGGTTGACCCTAACAAGCTGCTGCAAGTAACAACTTTGGATCGTTATCTTAAGTACCACGTAAAAGAGTTTGAGAGAACATTTGCTGTTAAGATGCCTGCCTGTTCAATTGCAGCAAAGAAGCACATTGATCAAAGCACAACTATCTTGGATGTGCAAGGAGTGGGTCTCAAGAGTATGAATAAAGCTGCAAGGGATCTCATCCAGATGCTTCAGAAGGTTGATGGTGATAACTATCCTGAGTCCCTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTCAGGCTGTTGTGGAACACTGTTAAGTCATTCCTTGATCCCAAAACCACCTCAAAAATCCATGTCCTAGGTAACAAATATCAAAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGCACTTGTACTTGTGCAGACAAAGGTGGTTGTATGCTTTCTGACAAGGGACCATGGAATGACCCTGAAATCTTGAAGATGGTCCAAAATGGTGGAGGAAAATGCAGGAGGAAAACTCTATCCGGGATTGAGGAGAAAACAATCGTTGAAGATGAAACGGGATATGAAAAGGAATCCTTTCTTCCCGAGGAGGCATGCAATGTGCCAAAAGTGGAGCACCCCAAATCCTATGCTGTAGCAGAAGTTGCAAAACAATGTACTGCATATCCGTATGACACCATTGTCCCAGTGATTGACAACTGCTCCTGGGAGAAAGCTGTACAAAATGAGCAACTGGCACTTTCTAAAGATTGTTTCCCTGACAATGCTTGCAAGACTTCTAATGGGTTTGGAAATCAATTTGCTGGTGGAGTCATGGCCATTGTAATGGGAATTGTAACATTCATCCGCTTGACATGGAACATGCCAAGGAAGATCACTGAAGCTGCCCTGTATGGTAGCTCAGTAGATTATGATGGCAACATAATAAAAGCACCTGCCATTTCCATTGATGATCAAATGGCCCTGATGAAGCGCATGGCTGATCTAGAAGAGAAGGTGAATGTCCTCAGCATGAGACCTGCCATGCCACCAGAAAAGGAAGAATTGCTAGACAATGCTCTAAACCGAGTCAGTATGCTGGAACAACAGTTGGCTTCTACCCAAAAGGCACTTGATGATGCCCTTGCTCGACAAGTGGAGCTTAAAGCCCATATTGACAAAAAGAAAAAGAAGAAGTTGTTCCACTGGTAA 1710 0.4269 MCDTLSTPIIDRPVKGIEAEYLEDEKKKRLGSLKKVAISASSKFKHSFAKKGRRHCRVISVGIEDELDSEELQAIDAFRQALILEELLPSKHDDHHMMLRFLRARKYDIEKTKQMWADMLQWRKEFGADTIMEDFEFKEIDEVLKYYPQGHHGVDKDGQPVYIERLGQVDPNKLLQVTTLDRYLKYHVKEFERTFAVKMPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLIQMLQKVDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPEILKMVQNGGGKCRRKTLSGIEEKTIVEDETGYEKESFLPEEACNVPKVEHPKSYAVAEVAKQCTAYPYDTIVPVIDNCSWEKAVQNEQLALSKDCFPDNACKTSNGFGNQFAGGVMAIVMGIVTFIRLTWNMPRKITEAALYGSSVDYDGNIIKAPAISIDDQMALMKRMADLEEKVNVLSMRPAMPPEKEELLDNALNRVSMLEQQLASTQKALDDALARQVELKAHIDKKKKKKLFHW. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03467 569 FunFam SEC14 cytosolic factor 127 339 - -
Seca4g03467 569 Pfam CRAL/TRIO, N-terminal domain 91 118 IPR011074 -
Seca4g03467 569 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Seca4g03467 569 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 20 562 - -
Seca4g03467 569 Gene3D - 39 126 - -
Seca4g03467 569 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Seca4g03467 569 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Seca4g03467 569 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Seca4g03467 569 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Seca4g03467 569 Gene3D - 127 338 IPR036865 -
Seca4g03467 569 SMART sec14_4 139 310 IPR001251 -
Seca4g03467 569 SUPERFAMILY CRAL/TRIO domain 139 335 IPR036865 -
Seca4g03467 569 CDD SEC14 140 308 IPR001251 -
Seca4g03467 569 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Seca4g03467 569 Coils Coil 523 550 - -
Seca4g03467 569 SUPERFAMILY CRAL/TRIO N-terminal domain 63 135 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03467 Seca-Chr4 60419428 60424618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03467 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 27.386 9.14e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03467 K26544 - gmx:100792335 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03467 4 60419428 60424618 Seca4g03467 4 60419428 60424618 ECH
Seca4g03467 4 60419428 60424618 Seca12g02774 12 49282136 49286391 ECH