Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02774 ATGTCTGGACCCCTGTCTCCTAGGACAGTTCCTGAAAAAATTGATCGAGCCGGTTCTTTGAAGAAAGCAGCAATGAGTGCCTCAAACAAGCTGAGGAACTCCCTCACAAGGAGGAGCAGACGAAGCAGCAGCAAGGTCATGTCCGTTGAAATTGAGGATTACCGTGATGCTGAGGAGTCCAAAGCTGTTGATGAGTTCCGTCAGGCTCTTGTTTTGGATGAGCTACTCCCTGAGAAGCACGATGATTATCATATGTTGCTCAGATTCCTGAAGGCCAGGAAATTTGACATGGAAAAATCAAAGCAAATGTGGTCTGACATGATTCAATGGAGGAAGGAATTTGGTGCTGACACCATTGTGGAGGAATTTGAGTTCAAGGAACTCGAAGAAGTCTTGCAATATTATCCCCAAGGACATCATGGAGTAGATAAGGATGGACGACCTGTGTACATTGAGAGACTTGGCCAAGTGGATGCCACCAAGATGATGCAAGTCACAACCATGGAGCGCTATGTCAAATACCATGTCAAGGAGTTTGAGAGGACATTTGATCTCAAGTTTGCAGCCTGTTCCATTGCTGCAAAGAAGCACATCGATCAAAGTACAACCATCCTCGATGTGCAAGGAGTGGGGCTCAAGAACTTCAACAAACATGCCAGGGAGCTCATCATGTGCCTTCAGAAGATTGATGGTGACAATTATCCTGAAACCTTGAGCCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAGCACCGTGAAATCCTTCCTTGACCCAAAGACCACTTCAAAAATCCATGTCCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATGATTGATGCAAGTGAGTTGCCAGAGTTTTTGGGAGGTTCTTGCACCTGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGACCATGGAAGGATCCAGAAATTTTGAGGATGGTTCAAAATGGTGAACACAAATGTTCAAGAAAATGTGAGGCTCCTGTCGTGGAAGAGAAGGCAGCTTCTGAGGAAAACGAGACTGCCAAAATGGAGGCAACCCTCACCGCACAATTGTCTTCTGTCTTTGGTGAGGTCCCTGCTGCTAAAGCTTGCAACTACGACGACTTTGTCCCTTCTGGTGATAAAGCTGTTTGGAAAAAGGTCGAGGAAAATGACACATTTGCTATGTCAAAAGAATTTGTTAGTTCTCTTATCCCCTTATATTGCCTTGCTATTCTGTGTACTGAATCATATATACATGCCTTTTTGCAACCCATGAGAGCAGCAGTAGAAACCTTCGCCATGGCTGATTCTTGCAAGATTCATGAAAAAGTGAATTCCCAAATTTTCACTGGAGTGATGGCCTTTGTCATGGGCATTGTCACCATGGTGAGGATGACAAGGAACATGCCAAAGAAGCTTACTGATGCCAACTTCTACTCCAACCCTGTTTTCTCCGCTGGCCAAGTTACTTCTGACCAATTGACCACCCCTGCCATCTCTGCTCAAGAGTTTATGACTGTGATGAAACGCATGGCTGAGTTGGAAGAGAAAATGTTCGCTTGGTAA 1575 0.4508 MSGPLSPRTVPEKIDRAGSLKKAAMSASNKLRNSLTRRSRRSSSKVMSVEIEDYRDAEESKAVDEFRQALVLDELLPEKHDDYHMLLRFLKARKFDMEKSKQMWSDMIQWRKEFGADTIVEEFEFKELEEVLQYYPQGHHGVDKDGRPVYIERLGQVDATKMMQVTTMERYVKYHVKEFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKHARELIMCLQKIDGDNYPETLSRMFIINAGSGFRMLWSTVKSFLDPKTTSKIHVLGNKYQSKLLEMIDASELPEFLGGSCTCADQGGCMRSDKGPWKDPEILRMVQNGEHKCSRKCEAPVVEEKAASEENETAKMEATLTAQLSSVFGEVPAAKACNYDDFVPSGDKAVWKKVEENDTFAMSKEFVSSLIPLYCLAILCTESYIHAFLQPMRAAVETFAMADSCKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKKLTDANFYSNPVFSAGQVTSDQLTTPAISAQEFMTVMKRMAELEEKMFAW. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02774 524 SMART sec14_4 127 298 IPR001251 -
Seca12g02774 524 MobiDBLite consensus disorder prediction 1 42 - -
Seca12g02774 524 Pfam CRAL/TRIO, N-terminal domain 78 106 IPR011074 -
Seca12g02774 524 SMART CRAL_TRIO_N_2 82 107 IPR011074 -
Seca12g02774 524 FunFam SEC14 cytosolic factor 115 327 - -
Seca12g02774 524 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 127 301 IPR001251 -
Seca12g02774 524 Pfam CRAL/TRIO domain 133 295 IPR001251 -
Seca12g02774 524 SUPERFAMILY CRAL/TRIO domain 127 323 IPR036865 -
Seca12g02774 524 Gene3D - 29 114 - -
Seca12g02774 524 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 15 521 - -
Seca12g02774 524 SUPERFAMILY CRAL/TRIO N-terminal domain 56 122 IPR036273 -
Seca12g02774 524 PRINTS Cellular retinaldehyde-binding protein signature 85 107 - -
Seca12g02774 524 PRINTS Cellular retinaldehyde-binding protein signature 254 273 - -
Seca12g02774 524 Gene3D - 115 327 IPR036865 -
Seca12g02774 524 CDD SEC14 132 295 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02774 Seca-Chr12 49282136 49286391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02774 61 292 Acyl Lipid Metabolism Gene Families AT5G47730 26.556 3.66e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02774 K26544 - gmx:100785716 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02774 12 49282136 49286391 Seca12g02774 12 49282136 49286391 ECH
Seca4g03467 4 60419428 60424618 Seca12g02774 12 49282136 49286391 ECH