Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03382 ATGAGGTGGGAAAAGGTAGAGGTAGGAGAAGGACCCGGGAAGAGGTGGGGTCACACGTGCAACGCCGTAAAAGGTGGCAGGTTCCTTTATCTCTTCGGTGGTTATGGCAAATATAACCGTCAAACCAACCAAGTTCACGTCTTCGATACTGTGAAGCAGACTTGGAGCCAGCCAGCTATAAAAGGCTGCCCACCTACTCCTAGGGACAGCCATAGCTGCACTACTGTGGGTGATTATCTTTTTGTGTTTGGGGGTACAGATGGGACCAATCTGCTGAAGGATTTGCATATATTAGACACTTCTTCACATACATGGATTTCTCCATCTGTAAAAGGAGAAGGACCGGAGGCACGTGAGGGACATAGTGCTGCACTCGTTGGCAAAAGCCTATTTGTATTTGGTGGCTGTGGAAAATCTGCACATAATAATAATGAGGTCAACTGCAATGATCTTTACATATTGAATACAGAGACGTTTGTTTGGAAGCGTGCTACAACATCAGGCACTGCGCCAGCTCCTCGTGATAGCCATACTTGCTCATCTTGGAAAAATATAATCATTGTGATAGGTGGTGAAGATGAACATGATTACTATCTGAATGATGTCCATATCCTTGATACTGATACTTTAATTTGGCGGGAGCTGCGTACATCAGGCCAATTATTGCCACCTCGAGCTGGTCATTGTACAGTTTCTTTTGGAAAATATTTGTTTGTTTTCGGGGGGTTTTCGAATGCTCAAAGTCTATACAATGACCTGTATATGCTTGACATTGATACTGGTTTATGGACGAAGGTGATAACTACACCCAATGGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGATCCATGTAAGGGTGGAGTTCTTGTGTTCATTGGCGGTTGTAATAGAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGTTTAGGTATTTTATGGGAAGGTAGACATGGACCGGAGAAGTTATCTTTAAAGAAGCAATTGAAGCTGAAATGCCAAGAACAAAATCTCAATCCTGTCCAGCCCATCACAGTGTCGGGTTATAGGAAACCAAGTAGACTAGATTCCTCTCAGACATTTTGTGGAAAGAACACATTTCTTGCCAAAGTTACTGAAAGCAGTTCAGATGGGTATGCTATTGAAACTGTTATTGAGGGAAAACGTCTTCATGGATTTGTGTTTCTAAACAAGCCAAACACTCTGAACCCCGCTACTAATACTTCTAGTAGGAAAAGGACTGCTGATGAAACTGGTAGTGTCATCTCAAATGGCATGCACCTAATCAATTTAACAACGTCTAAAGTGCACAAGCAGAATGGAACAGAAGATAGGCAGGGAGTACTAGGAGACGGGTCAGAATCTCATGAACACCTAGAGGAAGCTGTTGCTGCTGTCATACCAAGTAACCCAATAACTGCCAGTTCTTCCAACATCTTTAAGGTCAGGTAG 1467 0.4301 MRWEKVEVGEGPGKRWGHTCNAVKGGRFLYLFGGYGKYNRQTNQVHVFDTVKQTWSQPAIKGCPPTPRDSHSCTTVGDYLFVFGGTDGTNLLKDLHILDTSSHTWISPSVKGEGPEAREGHSAALVGKSLFVFGGCGKSAHNNNEVNCNDLYILNTETFVWKRATTSGTAPAPRDSHTCSSWKNIIIVIGGEDEHDYYLNDVHILDTDTLIWRELRTSGQLLPPRAGHCTVSFGKYLFVFGGFSNAQSLYNDLYMLDIDTGLWTKVITTPNGPSARFSVAGDCLDPCKGGVLVFIGGCNRSLEALDDMYYLYTGLGILWEGRHGPEKLSLKKQLKLKCQEQNLNPVQPITVSGYRKPSRLDSSQTFCGKNTFLAKVTESSSDGYAIETVIEGKRLHGFVFLNKPNTLNPATNTSSRKRTADETGSVISNGMHLINLTTSKVHKQNGTEDRQGVLGDGSESHEHLEEAVAAVIPSNPITASSSNIFKVR. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03382 488 SUPERFAMILY Galactose oxidase, central domain 3 215 IPR011043 -
Seca4g03382 488 Pfam Kelch motif 115 159 - -
Seca4g03382 488 Gene3D - 146 321 IPR015915 GO:0005515
Seca4g03382 488 MobiDBLite consensus disorder prediction 443 462 - -
Seca4g03382 488 Pfam Galactose oxidase, central domain 173 219 - -
Seca4g03382 488 Pfam Galactose oxidase, central domain 15 57 - -
Seca4g03382 488 Pfam Galactose oxidase, central domain 224 274 - -
Seca4g03382 488 Gene3D - 1 145 IPR015915 GO:0005515
Seca4g03382 488 SUPERFAMILY Galactose oxidase, central domain 212 306 IPR011043 -
Seca4g03382 488 PANTHER KELCH REPEAT DOMAIN 1 99 - -
Seca4g03382 488 MobiDBLite consensus disorder prediction 442 462 - -
Seca4g03382 488 Pfam Kelch motif 67 105 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03382 Seca-Chr4 58758365 58766484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03382 9 299 Acyl Lipid Metabolism Gene Families AT3G05420 27.687 1.55e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03382 - - aip:107634676 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03382 4 58758365 58766484 Seca4g03382 4 58758365 58766484 ECH
Seca12g01311 12 12831445 12837046 Seca4g03382 4 58758365 58766484 PCT