Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01311 ATGAGGTGGGAAAAGGTTCAGGTTAGCCCCATAGCCATAGAAGGCGAAGGAGTGGAAAGTGAGGTTTCTGGGCCAGGGAAGAGGTGGGGACACACCTGTAACGCCATTAAAGGAGGAAGACTTGTCTATGTCTTTGGTGGTTATGGCAAAGATAACTGTCAGACCAACCACGTTCATGTATTTGATACTGTGAAGCAGTCTTGGAGCCAACCCTTAATAAAAGGCTCCCCACCTGCTCCAAGGGACAGCCATACTTGCACAGCCATTGGTGATAATCTATATGTGTTTGGGGGTACAGATGGGATAAACCCTCTGAAGGATTTGCATATATTAGATACTTCTTCACACACATGGATATCTCCCACTATAAGAGGAGAAGGGCCAGAGGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGTAAACGGCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATACTAATAATGAGGTCTACTACAATGATCTTTACATATTGAATACAGAGACATTTGTTTGGAAGTGTGCTGCAACATCAGGCACTCCACCATCTCCTCGTGATAGCCACACTTGCTCATCTTGGAAAAACAAAATTATTGTGATAGGGGGGGAAGATGGGCATGATTATTATTTGTCCGACGTCCATATCCTTGATACTGATACTCTAATTTGGAGGGAGCTGAATACATCAGGTCAATTGTTGCCACCTCGAGCTGGTCATTCCACAGTTTCTTTTGGCAGAAGCTTGTTTGTTTTTGGTGGATTTACAGACGCCCAAAATCTATACAATGACCTTTATATGCTTGATACTGATACTGGTATTTGGACAAATGTTACACCTGCAATCAGTGGTCCTGTTGCTAGATTTTCTGTAGGTGGTGACTGCTTAGACCCATTTATGGGTGGTGTTCTCGTGTTCATCGGTGGTTGTAATAAAAACCTTGAGGCTCTGGATGATATGTATTACCTTCATACAGGGATTGCTAGGGAAAGTGAACAGAGACCAGAGAAGTTATCTTTAAGGAAGCAATTGAAGCTGAAATGCCAAGAACAAAATCTCAATCCTGGCCAAAATCAAGTTCTGGTTAGATATGGAGTGGGTGCTGATGTTAGCCCAATCACGACAGTGTTGAATTATAGCCAGCCAAGTAGATTAAATATCCCCGTAAATCAATCCCTGCCTCCTTCTGGAAAGAAAATGTTTGAAGCCAAGGTTACTGAAAACATCTCGGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAGTTCTGTTTTTAAACAAGCCAAACTCTCTGCACCCAGCTGCTCATGCTTTCAGTGGCAGGAAAAGGACTGCAGGTGAAATTGACAGTATTATCTCAAATGGTATACACACTAACAAATTAAAGACTCCTAAAGTGCTTAAGCAAAATCAAATGGAAAACAGTTCAGAATCCCATGAACACCATTCTGAAGCTGTTGCTGCACTTACATCAAGTAACCCAACAACTGAGAATGCTTCTGATACCCATAAGGTCAAGTTGTTTTACCTAGTTCTGATGGTTAGAGTTCTAGAAGCAAGCCTTAGTAGTGATGCCTAA 1596 0.4229 MRWEKVQVSPIAIEGEGVESEVSGPGKRWGHTCNAIKGGRLVYVFGGYGKDNCQTNHVHVFDTVKQSWSQPLIKGSPPAPRDSHTCTAIGDNLYVFGGTDGINPLKDLHILDTSSHTWISPTIRGEGPEAREGHSAAVVGKRLFIFGGCGKSADTNNEVYYNDLYILNTETFVWKCAATSGTPPSPRDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELNTSGQLLPPRAGHSTVSFGRSLFVFGGFTDAQNLYNDLYMLDTDTGIWTNVTPAISGPVARFSVGGDCLDPFMGGVLVFIGGCNKNLEALDDMYYLHTGIARESEQRPEKLSLRKQLKLKCQEQNLNPGQNQVLVRYGVGADVSPITTVLNYSQPSRLNIPVNQSLPPSGKKMFEAKVTENISEGYTIETVIDGKPLRGVLFLNKPNSLHPAAHAFSGRKRTAGEIDSIISNGIHTNKLKTPKVLKQNQMENSSESHEHHSEAVAALTSSNPTTENASDTHKVKLFYLVLMVRVLEASLSSDA. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01311 531 MobiDBLite consensus disorder prediction 476 505 - -
Seca12g01311 531 Pfam Galactose oxidase, central domain 186 232 - -
Seca12g01311 531 Pfam Galactose oxidase, central domain 80 118 - -
Seca12g01311 531 Pfam Galactose oxidase, central domain 237 281 - -
Seca12g01311 531 Pfam Galactose oxidase, central domain 28 78 - -
Seca12g01311 531 SUPERFAMILY Kelch motif 75 327 IPR015915 GO:0005515
Seca12g01311 531 SMART kelc_smart 249 295 IPR006652 GO:0005515
Seca12g01311 531 SMART kelc_smart 198 248 IPR006652 GO:0005515
Seca12g01311 531 SMART kelc_smart 92 141 IPR006652 GO:0005515
Seca12g01311 531 SMART kelc_smart 41 91 IPR006652 GO:0005515
Seca12g01311 531 MobiDBLite consensus disorder prediction 491 505 - -
Seca12g01311 531 Pfam Kelch motif 128 172 - -
Seca12g01311 531 Gene3D - 2 178 IPR015915 GO:0005515
Seca12g01311 531 Gene3D - 179 330 IPR015915 GO:0005515
Seca12g01311 531 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 25 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01311 Seca-Chr12 12831445 12837046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01311 25 312 Acyl Lipid Metabolism Gene Families AT3G05420 29.236 3.44e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01311 - - gmx:100820222 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01311 12 12831445 12837046 Seca12g01311 12 12831445 12837046 ECH
Seca12g01311 12 12831445 12837046 Seca4g03382 4 58758365 58766484 PCT