Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03178 ATGAAGAGAAAGTTCGAAACTTTGATACGGTTAACCAGGAAAAGATCCGTTCAGTTTCTGATCGGAATCGCTCTCTTGTACCTCCTTCTCGTCACTGTCGAAATCCCTTTCGTCTTAAAAACCGGGTTCGCCACCATCACCACTAACCCCCCAAGGCTACTCAGCGAGGAGGAACCAGAACAACGACAAGCCCCAACTCGCCCCTTCAAAACGGTTTCCAACGCTCACCCACCGAGTCAACTCGCCCGCCGCAAAATCATTTCCGGCTTGGTCTTAAACGACGCCGCTTTCAACCTTAACGGCCAGGACGGGTCCTTGGAGCTCTACAAGCTCGCCAAGAACGCACGCGAGGTGGGTTTGAGCCTCTGGAAAAACCTCCGGTCTGGGAAAACCGTTGCCTCGAAGCCCGAGAACCGGACCGGTTCGTGTCCCGGTTCGATATCGCTTTCCGGGTCGAATTTCTCTGGCGTGGCGGCGCTTCCTTGTGGGCTCACGTTAGGGTCCCACATAACGGTCGTTGGGAGGCCGTTGGCGGCGCGGCCGGATTTCGAGCCGAAGATAACGGCGGTGAGGGACGATGAACCGGTGATGGTGTCGCAGTTTGTGGTGGAGTTGCAGGGATTGAAGACGGTGGAGGGTGAGGATCCTCCTAGGGTTTTTCACTTCAATCCGAGGTTGAAGGGTGATTGGAGTGGAAAACCCGTGATTGAGCTCAACACGTGTTACCGTATGCAATGGGGTGCTGCGCTTAGGTGTGATGGTTGGAAATCAAAGGCTGATGAAGATACCGCTGATGAAGATGTTTGGGTTGTGATCGTGTTGGGTGCAGTTGATAGGCTTGTGAAATGTGAGAAGTGGATTCGTGATGATGAAAATAGCGCGGAGGAGTCAAAAGCAATGTGGTGGTTGAATAGACTGATAGGTCGCACCAAGAAAGTAACAGTTGACTGGCCTTTCCCGTTTGCTGAGAACAAGCTATTTGTTCTTACTCTTAGTGCTGGGTTGGAGGGGTATCATGTTACTGTTGATGGGAGGCATGTTGCCTCTTTTCCTTATCGCACTGGATTTACTCTTGAAGATGCCACTGGGCTTTCTTTGAGTGGAGACATTGATGTCCACTCTATATTTGCAGCCTCTTTGCCTTCATCACATCCTAGTTTTGCCCCACAGAGGCATCTTGAATTCTCAACAAGATGGTCTGCGCCGCCAATTCCTGACTCTGGTGTAGAATTGTTCATCGGGGTCCTCTCAGCCGGAAACCATTTCGCTGAGCGGATGGCTGTAAGGAAGTCATGGATGCAGCATAGGCTCATCAAATCTGCAACTGTGGTTGCTCGTTTCTTTGTAGCACTGCACCCAAGACAAGAAGTTAATGTAGAGTTGAAGAAGGAAGCAGAATTTTTTGGTGATATTGTTATAGTGCCTTACCTGGATAACTACGACCTTGTTGTGTTGAAAACAGTAGCCATATGTGAATATGGGGTTCACACTGTTTCTGCCAAGTATATCATGAAAGGTGATGATGACACTTTTGTTAAAGTGGATGCTGTTATCAATGAAGCAAGGAAGTTTCCTGATGATGCAAGCTTTTATATTGGGAACATAAATTACTATCACAAACCTTTGCGCTATGGTAAATGGGCGGTGACATATGAGGAATGGCCTGAAGAGGATTACCCACCATATGCTAATGGACCAGGTTATATTTTGTCATCAGATATTGCACGCTACATTGTATCTGAATTTGAGATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTCAACAGCTCAAAACCAGTACACTACTCGCATAGCTTGAATTTCTGCCAGTTTGGTTGCATAGAAGGCTATTACACGGCCCATTACCAATCACCTAGGCAGATGATGTGCCTGTGGGATAAATTGCAAAGGAAGACAAGGCCTCAATGCTGCAATATGAGATGA 1974 0.4777 MKRKFETLIRLTRKRSVQFLIGIALLYLLLVTVEIPFVLKTGFATITTNPPRLLSEEEPEQRQAPTRPFKTVSNAHPPSQLARRKIISGLVLNDAAFNLNGQDGSLELYKLAKNAREVGLSLWKNLRSGKTVASKPENRTGSCPGSISLSGSNFSGVAALPCGLTLGSHITVVGRPLAARPDFEPKITAVRDDEPVMVSQFVVELQGLKTVEGEDPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGAALRCDGWKSKADEDTADEDVWVVIVLGAVDRLVKCEKWIRDDENSAEESKAMWWLNRLIGRTKKVTVDWPFPFAENKLFVLTLSAGLEGYHVTVDGRHVASFPYRTGFTLEDATGLSLSGDIDVHSIFAASLPSSHPSFAPQRHLEFSTRWSAPPIPDSGVELFIGVLSAGNHFAERMAVRKSWMQHRLIKSATVVARFFVALHPRQEVNVELKKEAEFFGDIVIVPYLDNYDLVVLKTVAICEYGVHTVSAKYIMKGDDDTFVKVDAVINEARKFPDDASFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIARYIVSEFEMHKLRLFKMEDVSMGMWVEQFNSSKPVHYSHSLNFCQFGCIEGYYTAHYQSPRQMMCLWDKLQRKTRPQCCNMR. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03178 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 158 376 IPR013320 -
Seca4g03178 657 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 156 378 IPR001079 GO:0030246
Seca4g03178 657 FunFam Hydroxyproline O-galactosyltransferase 402 645 - -
Seca4g03178 657 FunFam Hydroxyproline O-galactosyltransferase GALT2 292 376 - -
Seca4g03178 657 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 390 606 IPR002659 GO:0006486|GO:0016020|GO:0016758
Seca4g03178 657 SMART Gal_bind_lectin_2 160 377 IPR001079 GO:0030246
Seca4g03178 657 FunFam Hydroxyproline O-galactosyltransferase GALT4 155 271 - -
Seca4g03178 657 Gene3D - 149 263 - -
Seca4g03178 657 Pfam Galactoside-binding lectin 158 376 IPR001079 GO:0030246
Seca4g03178 657 Gene3D - 294 376 - -
Seca4g03178 657 Gene3D - 407 652 - -
Seca4g03178 657 CDD GLECT 157 376 IPR001079 GO:0030246
Seca4g03178 657 MobiDBLite consensus disorder prediction 49 76 - -
Seca4g03178 657 Pfam Galactosyltransferase 424 604 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03178 Seca-Chr4 54412817 54416849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03178 4 657 Glycosyltransferase AT1G74800 63.529 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03178 K20843 - gmx:100795908 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03178 4 54412817 54416849 Seca4g03178 4 54412817 54416849 ECH
Seca12g01460 12 14733049 14736314 Seca4g03178 4 54412817 54416849 PCT