Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01460 ATGAAGAGAGCGAGAACGGGAAAATTAGACACCTTCGTTTCACTTACAAGGCAACGATCCTTTCAGATTCTAATCGCTATTGCGCTATTGTACGTTCTCTTGTTCACGCTCGAAATCCCCTTCGTCTTCAGAACCGCCGTTAGGAGACTCGCCCTTGAGGAAGAATCACCGACTCGCCAACTCGAACGATTCGCGCAACCGCCGAGTCAACTCTGTCACCGCCACAATTTGATCGTGTCAGGATTGGTCCTCAACGACGTCGCATTCGATTCGGAGGTTTACCAATCGGCGTGCCGAGTTGGGAAGAGGGTTTGGAAGGAGCTTGAATCGCGTGACCCGGGAATCGTGCCCGCGAAGCATGAGAATAAATCCGGGTCGTGCCCGAGATCCGTTTCGGTGTCCGGGTCAGAGTTTTTGAAGCGAGGGAGTGTGATGGTTATTCCTTGTGGGTTAACGTTAGGGTCCCACGTAACGGTGGTTGGGAAGCCGTTAAGGACACAGGGGAAAACGTGTCAGTTTGTGATGGAGTTGTTAGGGTTGGAGACGGTGGAAGGTGAGGAACCACCTAGGATCTTGCATTTCAATCCAAGGTTGAAAGGGGATTGGAGTGGGAAGTCAGTGATTGAGCTTAACACCTGTTACCGCATGCATTGGGGTTCTGCTTTGCGCTGTGATGGTTGGAAATCAAGGGCTGATGAAGATACTGTTGATGGGCTGGTGAAGTGTGAGAAGTGGATTGGGGGGGAGGATAGGCAAGCAGTGGAGTCTAAATCAGAATGGTGGTTGAAGAGACTAATTGGCCGAACAAAACAAGTAACAGTTGATTGGCCATTCCCATTTTCTGAGGACAAGCTATTTGTTCTTACTCTTAGTGCTGGATTGGAAGGCTATCATTTTAATATTGATGGGAGGCATGTGACCTCTTTTCCTTATCGCACTGGTTTTACTCTTGAGGATGCTACTGGACTTACTTTGAGTGCGGATATTGATATACACTCTATATTTGCTGCATCATTGCCTTCATTGCATCCCAGTGTTTCCCCACAGCAGCATCTTGAATTTTCAACCAGATGGTGTGCCCCTCCACTTCCTGATTCTGGCGTGGAAATGTTCATTGGCATCCTCTCAGCTGGAAACCATTTTGCTGAAAGGATGGCTGTAAGGAAGTCATGGATGCAGAATAGCCTTATCAAATCTTCAAAAGTGGCGGCTCGTTTCTTTGTAGCACTGCACCACAGAAAAGATGTTAATGCTGAGTTGAAGAAGGAAGCAGAGTTTTTTGGTGATATTGTTATAGTGCCTTACATGGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCGCACAGTTTCTGCAGAGTATATCATGAAAGGTGATGATGATACCTTTGTGAAAGTGGATGCTGTTATAAATGTAGCCAGGAACGTTCGGGATTCTATGAGCTTTTATATTGGGAACATTAATTACCACCACAAACCCTTGCGCCGTGGTAAATGGGCTGTGACATACGAGGAGTGGCCAGAAGAGGATTACCCACCCTATGCTAATGGACCTGGTTATATTTTGTCTTCTGATATTGCACGTTACATTGTGTCTGACTTTGAGATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACCGCACCAAACCAGTACACTATTCTCATAGCTTCAAGTTCTGCCAGTTTGGGTGTGTAGAAGGCTATTACACAGCCCATTACCAATCGCCAAGACAGATGATGTGCCTTTGGGATAAAATGCAGCAGCAAACAAGGCCTCAGTGCTGCAACATGAGATAA 1851 0.4608 MKRARTGKLDTFVSLTRQRSFQILIAIALLYVLLFTLEIPFVFRTAVRRLALEEESPTRQLERFAQPPSQLCHRHNLIVSGLVLNDVAFDSEVYQSACRVGKRVWKELESRDPGIVPAKHENKSGSCPRSVSVSGSEFLKRGSVMVIPCGLTLGSHVTVVGKPLRTQGKTCQFVMELLGLETVEGEEPPRILHFNPRLKGDWSGKSVIELNTCYRMHWGSALRCDGWKSRADEDTVDGLVKCEKWIGGEDRQAVESKSEWWLKRLIGRTKQVTVDWPFPFSEDKLFVLTLSAGLEGYHFNIDGRHVTSFPYRTGFTLEDATGLTLSADIDIHSIFAASLPSLHPSVSPQQHLEFSTRWCAPPLPDSGVEMFIGILSAGNHFAERMAVRKSWMQNSLIKSSKVAARFFVALHHRKDVNAELKKEAEFFGDIVIVPYMDNYDLVVLKTVAICEYGVRTVSAEYIMKGDDDTFVKVDAVINVARNVRDSMSFYIGNINYHHKPLRRGKWAVTYEEWPEEDYPPYANGPGYILSSDIARYIVSDFEMHKLRLFKMEDVSMGMWVEQFNRTKPVHYSHSFKFCQFGCVEGYYTAHYQSPRQMMCLWDKMQQQTRPQCCNMR. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01460 616 Gene3D - 366 611 - -
Seca12g01460 616 FunFam Hydroxyproline O-galactosyltransferase GALT6 143 236 - -
Seca12g01460 616 Gene3D - 143 335 - -
Seca12g01460 616 CDD GLECT 147 335 IPR001079 GO:0030246
Seca12g01460 616 SMART Gal_bind_lectin_2 147 336 IPR001079 GO:0030246
Seca12g01460 616 FunFam Hydroxyproline O-galactosyltransferase GALT2 251 335 - -
Seca12g01460 616 Pfam Galactoside-binding lectin 144 335 IPR001079 GO:0030246
Seca12g01460 616 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 143 337 IPR001079 GO:0030246
Seca12g01460 616 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 304 566 IPR002659 GO:0006486|GO:0016020|GO:0016758
Seca12g01460 616 Pfam Galactosyltransferase 383 563 IPR002659 GO:0006486|GO:0016020|GO:0016758
Seca12g01460 616 SUPERFAMILY Concanavalin A-like lectins/glucanases 145 335 IPR013320 -
Seca12g01460 616 FunFam Hydroxyproline O-galactosyltransferase 361 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01460 Seca-Chr12 14733049 14736314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01460 2 616 Glycosyltransferase AT1G74800 61.053 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01460 K20843 - gmx:100800292 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01460 12 14733049 14736314 Seca12g01460 12 14733049 14736314 ECH
Seca12g01460 12 14733049 14736314 Seca4g03178 4 54412817 54416849 PCT