Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03166 ATGCCTTCCTCCACAGTTCCAAGCCAAAACATAAAGCAGAGAGTACTCACGTGCCTCACCAAGCTCTCCGACAGGGACACTCAGTCACAAGGAGCGATGGAACTGGAGAACATTGCAAGAACAATTGACACAAGCTCGGTGCCGGTGCTCCTTTCTTGCATACACTCCACCGATGGTTCGGACAAATCACCGGTTCGCAAGCAATGCGTGCAGCTCGTGGCCACACTCTCCGAAGCACACGGCAACGCGCTTTCTCCTTTTCTCTCCAAAATCCTAACTAACATCGTCCGCCGCCTCCGCGACCCGGATTCGTCGGTCCGAACTGCCTGCGCCGATTCGGTTTCGGCATTGTCGGCGCACGTGACGAAGCAACCGTTTTCCTCCTTCCTGAAGCCGTTGGCGGAGGCGCTGTTCACGGAGCAGGAAGCGAACTCGCAGGCCGGTGCGGCACTGTGTCTGGCTTCCGCGATTCGCGGAGCTCCGGATCCGGACCCGGCCAGGCTGGCGAAGCTCCTCCCGAGGCTTGAGAAGTTGCTCAAGTGCGAGGGGTTCAAGGCCAAGGCGGCGGTTCTGGCGCTGATCGGAACCGTCGTGGAGGCCGGAGGCGCGTCCGGTCGCGATGGCGCGCTGAGGAACCTCGTTCCTTGCTTGGTGGAATCGTTGAGCAGTGATGACTGGGCCACGAGGAAGGGCGCTGCGGAGGCGTTGCTGAAACTAGCCGTCGTGGAGAGGGACTCCTTATCGGAATTCAAGGCTTCATGTATGAAAGTTTTCGAGAATCGACGGTTCGATAAGGTAAAGTTGGTTCGGGAAGCTATGAATCGGATGTTGGAGGCATGGAAGCAAATTCCTGATGTTTCTGGTGAATTCTCTCCACCACCTCCATCGCAATGTTCTTCAAAAGATGTCCTTTTTGGTTCAGAGAATGCAACTGATGGGCGGTATCCTCCAGTGTCTCAAAATTCATGTAGTCCTGGATCTGTAATGACTAAATTGAGGAAGAAATCCAGCCCAGTTAGCAGATTAACTCTGCCTGATAGATCTGCTGCTGGGAATTGTAAAAAGATGAGTGTTTTAAGTGGCCATCAGAGAATGAGTTCAGGTGTTTTGCGTAAACTAAACCATGATGATTGGGATGTTCGAATAGCTGTGTCAAATGCTCCCTTCAAACCCATGGCTGATCAGGGTGAACATCAGCAGAAGGGTGAAACTGTTTTGGAAAGAAGCAGAAAGGATAAAAGCAGATTTTTGAAGTTAGAAATGAAACGGGCTATATTTGATAAAAATCCTGATGACAAGATGCATAAATTTGGTGGGTCCAAAGCTGGATCTCGGGTGGTTCCTTATTCTGAAGAAAGACAGGACTCAAATCCTGTCTGCAATGTCACTAAAGATCTCCATTTGAATGACAAAGAGAGTGAGGAATTATCTTTGATCCGTAACCAGCTACTTCAAATTGAGAAGCAGCAGTCAAGTCTGCTTGATCTTCTGCAGAAATTTATTGGTAGCTCTGAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTCGAGTTAGCATTGGATGAGATCTCCTATGATTTGGCTGTATCAAGTGGAAGGATGTCTAAATCTGATGCTCCTAGGAATACATGTTGCCTGCTACCTGGTGCTGAATTTTTAAGCTCCAAATTTTGGAGGAAAACACAGGGCCGGTATTCATCCTCTCAGTTCTCTAGATTTGGTGGCACCCCATCACTAACTACCTCTCACTACAGAGCCAATAGGAATGCTGAAACTAAGGTGACAGGCCACAGATTTAGGGTCCATGGTGATGGAGGGTTCATCACTAATCCTTTGTCAGAGGTTAATACTAATTCAAGGGAGGTTTCAGGATTTGTAAGATCAGAGCCAGTTTAA 1902 0.4916 MPSSTVPSQNIKQRVLTCLTKLSDRDTQSQGAMELENIARTIDTSSVPVLLSCIHSTDGSDKSPVRKQCVQLVATLSEAHGNALSPFLSKILTNIVRRLRDPDSSVRTACADSVSALSAHVTKQPFSSFLKPLAEALFTEQEANSQAGAALCLASAIRGAPDPDPARLAKLLPRLEKLLKCEGFKAKAAVLALIGTVVEAGGASGRDGALRNLVPCLVESLSSDDWATRKGAAEALLKLAVVERDSLSEFKASCMKVFENRRFDKVKLVREAMNRMLEAWKQIPDVSGEFSPPPPSQCSSKDVLFGSENATDGRYPPVSQNSCSPGSVMTKLRKKSSPVSRLTLPDRSAAGNCKKMSVLSGHQRMSSGVLRKLNHDDWDVRIAVSNAPFKPMADQGEHQQKGETVLERSRKDKSRFLKLEMKRAIFDKNPDDKMHKFGGSKAGSRVVPYSEERQDSNPVCNVTKDLHLNDKESEELSLIRNQLLQIEKQQSSLLDLLQKFIGSSENGMRSLETRVHGLELALDEISYDLAVSSGRMSKSDAPRNTCCLLPGAEFLSSKFWRKTQGRYSSSQFSRFGGTPSLTTSHYRANRNAETKVTGHRFRVHGDGGFITNPLSEVNTNSREVSGFVRSEPV. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03166 633 SUPERFAMILY ARM repeat 9 383 IPR016024 -
Seca4g03166 633 Coils Coil 469 489 - -
Seca4g03166 633 ProSiteProfiles HEAT repeat profile. 91 129 IPR021133 -
Seca4g03166 633 Gene3D - 3 387 IPR011989 -
Seca4g03166 633 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 6 592 IPR033337 GO:0005874|GO:0008017
Seca4g03166 633 MobiDBLite consensus disorder prediction 430 456 - -
Seca4g03166 633 FunFam TORTIFOLIA1-like protein 3 isoform A 2 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03166 Seca-Chr4 54230484 54234045 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03166 - - gmx:100778310 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03166 4 54230484 54234045 Seca4g03166 4 54230484 54234045 ECH
Seca12g01481 12 14966688 14970280 Seca4g03166 4 54230484 54234045 PCT