Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01481 ATGTCGTCGCCGCAGAACCTAAAACAGAGGGTCTTCGCGTGCCTGACCAAACTCTCCGACCGCGACACTCACTCCCTCGCCGTCACCGAACTTGAGTCAATTGCTCGGAATCTCGACACAAGCACCGTGCCGGTTTTCCTCTCTTGCATGTACTCCACCGATGCCTCTGACAAATCACCGGTTCGCAAGAAATGCGTGCAACTCATAGGGTTACTCTCAGAGACTCATGGCAACGCGCTCTCTCCCTACCTCTCCAAGATACTCGCCAGCATCGTTCGCCGCCTCCGAGACCCGGACTCGTCGGTCCGATCCGCGTGTGTGAATTCGGTTTCGGCATTGTCGAGCCACGTCACCAAGCAACCGTTAAATTCCTTCCTGAAGCCGTTAGCGGAGGCTCTGTGCACGGAGCAGGACCAGAACGCGCAGATTGGCGCAGCGCTGTGTCTGGCTTCGGCGATTGATGGAGCTCCAGATCCGGATTCGGCCAGGCTGTCGAAGTTGTTGCCGAAATTCGAGAAGCTTCTGAAACACGACGGATTCAAGGCGAAGCCGGCGGTTTTGACGCTGATTGGAAGCGTCGTCGATGCCGGTGGCGCGTCTGGACATGCCGCCTTGAGGAATTTGGTTCCTTGCTTGGTGGAATCGTTGAGCAGCAAAGATTGGGCGGTGAGGAAGGCTTCAGCGGAGGTGCTGGTGGTGTTGGCCAACGTCGAGCGGGATTTCTTGTCGGAATTCAAGGCTAAGTATTTCAAAGTTTTCGAGAATCGACGATTTGATAAGGTTGTGAAGTTAGTTCGGGAAGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAATTTTCGCCACCTCCTCAATCGCAATCTTCTTCGAAAGAGAATGCAAGTGATGGGCGCTATCCCCCAGTCTCTCAAAATTCATGTAGTCCTGGTTTAGTCATGGCGAATTTGAGGAGGAAATCGGCTCCTGCTAGCAGATTCAGTCCACCAGATAGTTCTTCTGCGAGCAATGCTAAGAATATAAGTGGTAACAAGAGACTGAGTTCAGTTGTTTCGCGAAAATCAAACCATAAGAATTGCGATGTTCAAATGGCCCTGTCCAATGCTCCTTCTGCGGCCATGGCTGATCAAGGTGATCTCCAGGAGAGGGATGGAACTGTTTTGGAAAGAAGCAAGATGGATAAAAGCAGATTCTTAAAGCCAGAAGTGAAACGGGCACTGTTCAATAAAAACACTGACGATAAAATAAGAAAGTATGGTGGGTCCAAAGCTGGATCTCGGGTGTTTCCATATCATGAAGAGAGTCAAGACTCAGTTCCTGTCAGTGATGTTTCTAAAGATCTCCATAGGAATGACAAAGAGAGTGAAGATTTATCTTTGATCCGCGACCAGTTACAGCAAATTGAGAAGCAGCAGTCAAGTCTTCTTGATCTTCTGCAGAATTTCATCGGAAGCTCACAAAATGGAATGCGTTCCTTAGAAACTCGTGTACATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTGTATCAAGTGGAAGGATGACTAATTCTGATGCTCCTCGTAATACATGTTGCTTGCTATCTGGAGCAGAATTTTTTAGCTCCAAATTCTGGAGGAAAACACAGGGCCGGTATTCATCCTCGCGGTTCTCTAGATCTGGTGGTGGCACCCCATCACTTGCTGCTAGGCACTACAAAGCTGACAGGAATGCTGAAACTAAGTTGACAAGCAACAGATTCAGGCTTGATGGACGCATCATCACTAATCCGCTGGCTGAGGTTCATACTAATTCGAGGGATTTTGCTACATCACAGCCAGTTTAA 1851 0.4889 MSSPQNLKQRVFACLTKLSDRDTHSLAVTELESIARNLDTSTVPVFLSCMYSTDASDKSPVRKKCVQLIGLLSETHGNALSPYLSKILASIVRRLRDPDSSVRSACVNSVSALSSHVTKQPLNSFLKPLAEALCTEQDQNAQIGAALCLASAIDGAPDPDSARLSKLLPKFEKLLKHDGFKAKPAVLTLIGSVVDAGGASGHAALRNLVPCLVESLSSKDWAVRKASAEVLVVLANVERDFLSEFKAKYFKVFENRRFDKVVKLVREVMNQMLEAWKQIPDVSDEFSPPPQSQSSSKENASDGRYPPVSQNSCSPGLVMANLRRKSAPASRFSPPDSSSASNAKNISGNKRLSSVVSRKSNHKNCDVQMALSNAPSAAMADQGDLQERDGTVLERSKMDKSRFLKPEVKRALFNKNTDDKIRKYGGSKAGSRVFPYHEESQDSVPVSDVSKDLHRNDKESEDLSLIRDQLQQIEKQQSSLLDLLQNFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSGRMTNSDAPRNTCCLLSGAEFFSSKFWRKTQGRYSSSRFSRSGGGTPSLAARHYKADRNAETKLTSNRFRLDGRIITNPLAEVHTNSRDFATSQPV. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01481 616 MobiDBLite consensus disorder prediction 331 361 - -
Seca12g01481 616 Gene3D - 4 370 IPR011989 -
Seca12g01481 616 SMART TOG_3 30 262 IPR034085 -
Seca12g01481 616 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 6 587 IPR033337 GO:0005874|GO:0008017
Seca12g01481 616 Pfam HEAT repeat 208 236 IPR000357 GO:0005515
Seca12g01481 616 Pfam HEAT repeat 88 116 IPR000357 GO:0005515
Seca12g01481 616 SUPERFAMILY ARM repeat 7 487 IPR016024 -
Seca12g01481 616 MobiDBLite consensus disorder prediction 285 317 - -
Seca12g01481 616 MobiDBLite consensus disorder prediction 281 361 - -
Seca12g01481 616 Coils Coil 456 476 - -
Seca12g01481 616 FunFam TORTIFOLIA1-like protein 3 isoform A 1 354 - -
Seca12g01481 616 ProSiteProfiles HEAT repeat profile. 87 125 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01481 Seca-Chr12 14966688 14970280 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01481 - - gmx:100789197 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01481 12 14966688 14970280 Seca4g03166 4 54230484 54234045 PCT