Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03083 ATGCCAGGAATTGTTACAAATGGGATTCATGATGAGGGGGGACCTAATGAGATGAATGGGAACCATTCCCCCTCTAAGGAAACCTTAACTCCAATCAAGACCCCAAGGAGTTCCCTGAGCCCACAAAGACAACAAAGTGCTGGTCCCAATTTCCCGGTGGATGGGGTGGTTGAGCCAACCATTGAGGAGCTTTATGAAAATGTGTGTGACATGCAGAGTTCTGATCAGTCACCCTCAAGGCAAAGTTTTGGATCTGATGGTGATGAGTCTAGGATCGATTCGGAATTGCGTCATCTAGTTGGAGGACGGATGAGGGAGGTGGAGATAATGGAAGAGGAAGTGGAGGTGGAGGTGGAAAAAAGGCCAGGAGGGAGTTCTAGTTGTGAAACATCTTCTGAAATGGGTAGTGTATCCAATGATAAGAAGTTGGATAAGGTGGATGAGATTCAATCTGCAACTACAACTTCTGTTTCCTCAGAAAAACCTGTCAAAGCATTGAACTCACAGTTGGGCCCTGAATCATCTGATGCTTCTTCACCTAAATCAAAACCCAAAGGAAAAAGTCCTCCTGCAAAACCTCCTATTCAGAGAAAGAATGATAAGCCTTTGAGAAAACAAACTACAGGAGTTACTGGCGTGAAGAATGCAAAGAATTCTCCTTTGGGAAAGTCAGTGTCACGAAACCGAATAGAGAATTCAGCTGAATCAGAATTAGATAGACCAGAGAAGGCACCAGTATTACTAAAGCAAGCAAGAGATCTGATTTCATCAGGAGATAATCCGCAGAAAGCTCTTGAATTAGCTCTTCAAGCTATGAAATTGTTTGAGAAGTTTGGTAATGGGAAACCGAGTCTGGAGCTGGTTATGTGTTTACATGTTACAGCAGCAATATATTGCAGCTTGGGTCAATACAATGAGGCAATTCCAATTCTTGAGCGCTCAATTGAGATTCCTGTTGCTGGGGAAAGTCAACAGCATGCCCTTGCTAAATTTGCTGGTCACATGCAACTGGGAGACACCTATGCTATGCTGGGCCAGCTTGAGAATTCAATTATGTGCTACACTGCTGGGTTTGAAGTCCAGAGGCAGGTTTTGGGAGAAACAGATCCAAGAGTTGGTGAAACTTGTCGGTATGTGGCTGAAGCTAATGTTCAAGCTTTGCAATTTGATGAAGCAGAGAGGCTCTGTCAAATGGCGCTTGACATTCATAAAGCAAATAGTTCAGCCCCATCACTTGAAGAGGCAGCAGATAGGAGGCTCATGGGCCTAATTTGTGAAACAAAGGGAAATCACGAAGCAGCTCTTGAGCATCTTGTATTAGCCAGCATGGCAATGGTAGCAAATGGCCAGGAAGTGGAAGTGGCATCTGTTGACTGCAGCATTGGAGACACATATTTATCCTTGGCTCGATATGATGAGGCTGTCTGTGCATATCAGAAAGCATTGACAGCTTTCAAGACCAGCAAAGGAGAGAATCATCCAACAGTAGGATCAGTCTTTGTACGTTTGGCTGACTTGTATAACAGGACAGGGAAGATAAGGGAATCAAAATCATATTGTGAGAGTGCACTTAGAATATATGAGAATCCAATGCCTGGGGTTACTCCAGAAGAGGTTGCTAGTGGTCTTACGAATGTTGCAACTATCTATGAATCAATGAATGAGCTTGAACAGGCACTCAAGTTACTGAGGAAAGCACTGGAGATATATAATGATGCCCCTGGTCAGCAAGGCACAATAGCAGGAATTGAAGCTCAGATGGGGGTCATGTACTACATGTTGGGGAACTACACAGAATCTTACAACACTTTGAAGACTTCTATTTCAAAGCTTCGTGCTATTGGAGAAAAGAAATCATCCTTCATTGGTATTGCTCTTAATCAAATGGGTCTTGCCTGTGTGCAGCGTTATGACTTAAGTGAGGCTACAGCATTATTTGAAGAAGCAAAGAGTATTTTGGAACATGAGTACGGACCTTATCACCCTGAAACTCTTGGGGTATATAGTAATCTTGCTGGCACATATGATGCAATTGGCAGGTTGGATGATGCAATTCAAATTCTGGAGTATGTTGTTAATATGAGGGAGGAAAAACTTGGAACAGCAAATCCTGATGTGGATGATGAGAAGAGAAGGTTGGCTGAGTTGTTGAAGGAAGCAGGAAGAGTTCGGAGCAGAAAAGCCAGGTCGCTTGAGAACCTTCTTGATGGCAATGCTCGCAGTACTGTAAATAACCTTGTCATCAATGCCTCATAA 2256 0.434 MPGIVTNGIHDEGGPNEMNGNHSPSKETLTPIKTPRSSLSPQRQQSAGPNFPVDGVVEPTIEELYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVEVEVEKRPGGSSSCETSSEMGSVSNDKKLDKVDEIQSATTTSVSSEKPVKALNSQLGPESSDASSPKSKPKGKSPPAKPPIQRKNDKPLRKQTTGVTGVKNAKNSPLGKSVSRNRIENSAESELDRPEKAPVLLKQARDLISSGDNPQKALELALQAMKLFEKFGNGKPSLELVMCLHVTAAIYCSLGQYNEAIPILERSIEIPVAGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTAGFEVQRQVLGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHKANSSAPSLEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEVEVASVDCSIGDTYLSLARYDEAVCAYQKALTAFKTSKGENHPTVGSVFVRLADLYNRTGKIRESKSYCESALRIYENPMPGVTPEEVASGLTNVATIYESMNELEQALKLLRKALEIYNDAPGQQGTIAGIEAQMGVMYYMLGNYTESYNTLKTSISKLRAIGEKKSSFIGIALNQMGLACVQRYDLSEATALFEEAKSILEHEYGPYHPETLGVYSNLAGTYDAIGRLDDAIQILEYVVNMREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKARSLENLLDGNARSTVNNLVINAS. 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03083 751 Pfam Tetratricopeptide repeat 623 696 - -
Seca4g03083 751 Pfam Tetratricopeptide repeat 454 529 - -
Seca4g03083 751 MobiDBLite consensus disorder prediction 149 182 - -
Seca4g03083 751 Pfam Tetratricopeptide repeat 295 317 IPR019734 GO:0005515
Seca4g03083 751 Gene3D Tetratricopeptide repeat domain 617 732 IPR011990 GO:0005515
Seca4g03083 751 Gene3D Tetratricopeptide repeat domain 442 616 IPR011990 GO:0005515
Seca4g03083 751 MobiDBLite consensus disorder prediction 230 244 - -
Seca4g03083 751 Gene3D Tetratricopeptide repeat domain 230 331 IPR011990 GO:0005515
Seca4g03083 751 Gene3D Tetratricopeptide repeat domain 332 441 IPR011990 GO:0005515
Seca4g03083 751 MobiDBLite consensus disorder prediction 86 122 - -
Seca4g03083 751 Pfam Tetratricopeptide repeat 540 573 - -
Seca4g03083 751 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 44 739 - -
Seca4g03083 751 MobiDBLite consensus disorder prediction 18 49 - -
Seca4g03083 751 SUPERFAMILY TPR-like 452 573 IPR011990 GO:0005515
Seca4g03083 751 ProSiteProfiles TPR repeat profile. 455 488 IPR019734 GO:0005515
Seca4g03083 751 Coils Coil 706 726 - -
Seca4g03083 751 MobiDBLite consensus disorder prediction 205 229 - -
Seca4g03083 751 MobiDBLite consensus disorder prediction 68 85 - -
Seca4g03083 751 SMART tpr_5 581 614 IPR019734 GO:0005515
Seca4g03083 751 SMART tpr_5 288 321 IPR019734 GO:0005515
Seca4g03083 751 SMART tpr_5 497 530 IPR019734 GO:0005515
Seca4g03083 751 SMART tpr_5 665 698 IPR019734 GO:0005515
Seca4g03083 751 SMART tpr_5 455 488 IPR019734 GO:0005515
Seca4g03083 751 SMART tpr_5 623 656 IPR019734 GO:0005515
Seca4g03083 751 SMART tpr_5 373 406 IPR019734 GO:0005515
Seca4g03083 751 SMART tpr_5 540 573 IPR019734 GO:0005515
Seca4g03083 751 SMART tpr_5 331 364 IPR019734 GO:0005515
Seca4g03083 751 Coils Coil 546 573 - -
Seca4g03083 751 MobiDBLite consensus disorder prediction 68 244 - -
Seca4g03083 751 SUPERFAMILY TPR-like 583 723 IPR011990 GO:0005515
Seca4g03083 751 MobiDBLite consensus disorder prediction 1 55 - -
Seca4g03083 751 SUPERFAMILY TPR-like 241 439 IPR011990 GO:0005515
Seca4g03083 751 ProSiteProfiles TPR repeat profile. 540 573 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03083 Seca-Chr4 52937417 52940516 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03083 - - gmx:100791625 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01537 12 16164253 16168321 Seca4g03083 4 52937417 52940516 ECH
Seca4g03083 4 52937417 52940516 Seca4g03083 4 52937417 52940516 ECH
Seca12g01537 12 16164253 16168321 Seca4g03083 4 52937417 52940516 PCT