Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01537 ATGCCAGGAATTGTTGCAGTTAATGAGGAAGGTGGAGCAAATGGAATGAATGAGATTGAGAACCTTTCACCCTCTAAGGAAACCATAATTCCAATAAAATCCCCAAGGAGTTCCTTGAGTCCACAAAGACGTCAAAGTACTGATTCTAATTTTCCTGTTGATGGGGTGGTTGACACCTCCATTGAGCGGCTTTATGAAAATGTCTGTGACATGCAAAGTTCTGATCAATCACCCTCAACACGAAGTTTTGAATCTGAATGTGATGAGTCTAAAATCGATTCAGAGTTGCACCATCTAGTTGGGGGACAGATGAGGGAGGTGGAAAGAGTGAAAGAGGAAGTGGAGAAAGAGACAGAGGGGGATTCTAGCAGTGAAGCATCTTTTAAAATGGATAGTTCAACCCATGATAAGAAGTTGGATAAGGTGGATGAGATTCAGTCTGCAACTACAACTGCTGTTTCTCCAGAAAAACCAGGCAAAGCTTCAAACTCACGGTTGACCCCTGCAGCATCATCAAAATCAAGACCCAAGGGTAAAAGTCCTCCTGCAAAACATCCAGTTGAAAGGAAGAATGATAATCCTTTGAGAAAACAAAATACAGGAATTACTCGCGTGACAAAATCAAAGTATTCTTCTGTTGGAAGATCAGTTTCACTAGGTCCAGTTGAGAATTCCACTGGATCAGCACAAGATAAGCCTGAGCTGGGATCAGTTTTATTAAAGCAAGCAAGGGACCTGATTTCATCAGGAGATAATCCACAGAAAGCTCTTGAATTAGCTCTTCAAGCAATGAAATTGTTTGAGAAGGCTGCTAATGGGAAACCGAGTCTGGAGCTGGTTATGTGTTTACATGTTACAGCAGCAATATATTGCAGCTTGGGCCGTTACAATGAGGCAATTCCAATTATAAAGCGTTCAATTGAGATTCCTGTTATTGAGGAAGGCCAAGAACATGCCATTGCTAAATTTGCCGGTCACATGCAACTGGGAGACACCTATGCTATGTTGGGCCAGCTTGAGAATTCAATTAGGTGCTACACCGCAGGGTTGGAAGTACAGAGGCAGGTTTTGGGAGAAACAGACCCAAGATTTGGTGAGACTTGTCGGTATGTGGCTGAAGTTAATTTTCAGGCATTGCATTTTGATGAGGCAGAGAGGCTATGCCAAATGGCTCTTGACATTCATAGAGCAAATGGCTCACCCTCATCTCTTGAAGAGGCAGCTGACAGGAGGCTGATGGGCCTTATATGTGAAACAAATGGAAATCATGAAGCAGCCCTGGAGCATCTTGTTTTAGCTAGCATAGCAATGGTAGCAAATGGCCATGAAGTGGAAGTGGCTTCAGTTGACTGCAGCATTGGAGACACATTCTTATCCTTGGCTCGATATGATGAGGCCATTTTAGCATATCAGAAAGCATTAACAGTTTTCAAGGTCCACAAAGGAGAGAATCATCCTGCTGTGGGATCAGTCTTTGTACGTCTGGCTGACTTGTACAACAGGACATGGAAGATAAGGGAATCAAAATCATATTGTGAGAATGCACTTAGAATCTACGAGAATCCCATGCCTGGGGTCCCACCTGAGGAGATTGCTAGTGGTCTTATGAATGTTTCAGCTATCTATGAGTCAATGAATGAGCTTGAACAGGCACTTAAATTACTACACAAGGCCCTAGAGATACATAATGATGCTCCTGGTCAGCAAAGCACAATAGCAGGAATTCAAGCTCAGATGGGGGTCATGTACTACATGTTGGGGAACTATGCTGAATCTTACAATGCTTTCAAGAATGCTGTCTCAAATCTTCGTCTTATTGGAGAGAAGAAATCAACCTTCTTTGGTATTGTTCTTAATCAAATGGGACTTACTTGTGTGCAGCGTTATGCATTGAGTGAGGCTGCAGAATTATTTGAAGAAGCGAAGATTGTATTGGAACAAGAGTATGGACCCTATCACCCTGAAACACTTGGGATATATAGCAATCTTGCTGGCACGTATGATGCAATTGGCAGGCTGGATGACGCAATTGATATTCTGGAGTACATTGTCGCTGTGAGAGAGGAAAAGCTTGGGACAGCAAATGCTGATGTTGTTGATGAGAAGAAAAGGTTGGATGAATTGTTGAAAGAAACAGGTAGAGTTCGGAACAGAAAAGCCAAGTCACTCGAGAATCTTCTCGATGCCAATGCTCGTACTATAAACAACCATGTCATCAAGGCTTGA 2226 0.4268 MPGIVAVNEEGGANGMNEIENLSPSKETIIPIKSPRSSLSPQRRQSTDSNFPVDGVVDTSIERLYENVCDMQSSDQSPSTRSFESECDESKIDSELHHLVGGQMREVERVKEEVEKETEGDSSSEASFKMDSSTHDKKLDKVDEIQSATTTAVSPEKPGKASNSRLTPAASSKSRPKGKSPPAKHPVERKNDNPLRKQNTGITRVTKSKYSSVGRSVSLGPVENSTGSAQDKPELGSVLLKQARDLISSGDNPQKALELALQAMKLFEKAANGKPSLELVMCLHVTAAIYCSLGRYNEAIPIIKRSIEIPVIEEGQEHAIAKFAGHMQLGDTYAMLGQLENSIRCYTAGLEVQRQVLGETDPRFGETCRYVAEVNFQALHFDEAERLCQMALDIHRANGSPSSLEEAADRRLMGLICETNGNHEAALEHLVLASIAMVANGHEVEVASVDCSIGDTFLSLARYDEAILAYQKALTVFKVHKGENHPAVGSVFVRLADLYNRTWKIRESKSYCENALRIYENPMPGVPPEEIASGLMNVSAIYESMNELEQALKLLHKALEIHNDAPGQQSTIAGIQAQMGVMYYMLGNYAESYNAFKNAVSNLRLIGEKKSTFFGIVLNQMGLTCVQRYALSEAAELFEEAKIVLEQEYGPYHPETLGIYSNLAGTYDAIGRLDDAIDILEYIVAVREEKLGTANADVVDEKKRLDELLKETGRVRNRKAKSLENLLDANARTINNHVIKA. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01537 741 Gene3D Tetratricopeptide repeat domain 610 736 IPR011990 GO:0005515
Seca12g01537 741 MobiDBLite consensus disorder prediction 70 232 - -
Seca12g01537 741 Pfam Tetratricopeptide repeat 617 687 - -
Seca12g01537 741 MobiDBLite consensus disorder prediction 18 54 - -
Seca12g01537 741 MobiDBLite consensus disorder prediction 181 195 - -
Seca12g01537 741 Coils Coil 545 565 - -
Seca12g01537 741 SUPERFAMILY TPR-like 259 694 IPR011990 GO:0005515
Seca12g01537 741 Gene3D Tetratricopeptide repeat domain 436 609 IPR011990 GO:0005515
Seca12g01537 741 ProSiteProfiles TPR repeat profile. 447 480 IPR019734 GO:0005515
Seca12g01537 741 MobiDBLite consensus disorder prediction 196 232 - -
Seca12g01537 741 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 44 731 - -
Seca12g01537 741 Pfam Tetratricopeptide repeat 452 475 IPR019734 GO:0005515
Seca12g01537 741 Gene3D Tetratricopeptide repeat domain 224 435 IPR011990 GO:0005515
Seca12g01537 741 MobiDBLite consensus disorder prediction 145 174 - -
Seca12g01537 741 ProSiteProfiles TPR repeat profile. 532 565 IPR019734 GO:0005515
Seca12g01537 741 SMART tpr_5 532 565 IPR019734 GO:0005515
Seca12g01537 741 SMART tpr_5 489 522 IPR019734 GO:0005515
Seca12g01537 741 SMART tpr_5 615 648 IPR019734 GO:0005515
Seca12g01537 741 SMART tpr_5 657 690 IPR019734 GO:0005515
Seca12g01537 741 SMART tpr_5 323 356 IPR019734 GO:0005515
Seca12g01537 741 SMART tpr_5 280 313 IPR019734 GO:0005515
Seca12g01537 741 SMART tpr_5 573 606 IPR019734 GO:0005515
Seca12g01537 741 SMART tpr_5 447 480 IPR019734 GO:0005515
Seca12g01537 741 SMART tpr_5 365 398 IPR019734 GO:0005515
Seca12g01537 741 MobiDBLite consensus disorder prediction 1 55 - -
Seca12g01537 741 Coils Coil 691 711 - -
Seca12g01537 741 Pfam MalT-like TPR region 251 431 IPR041617 -
Seca12g01537 741 MobiDBLite consensus disorder prediction 82 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01537 Seca-Chr12 16164253 16168321 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01537 - - gmx:100813461 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01537 12 16164253 16168321 Seca4g03083 4 52937417 52940516 ECH
Seca12g01537 12 16164253 16168321 Seca12g01537 12 16164253 16168321 ECH
Seca12g01537 12 16164253 16168321 Seca4g03083 4 52937417 52940516 PCT