Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03077 ATGAAACTAACATTGCCTCAAAACGGTTTTGAACAACAAGAACAAGAGATGTGCGAGCATGTCAGCAGCAACGAAGACGATTCTGTCGTTTCCGATTGCGAGAGCGGCGTTTCGGGCACCAAAAAAGTGGTGCAACGACACACTCCTCCAGGGTCGTTTTTAGTTAGGCTCGGGGAAGGCGATGCCGTTCACGACCTCATCAAAAGAAGGTTCATCCAGGGCCTGGGCTTTCTGGGGACCAAAACCGACGTTATCGCTATTCATCGAAACGCGTGTTCCAGCGTCGTTTCACAGGCAAAGCTTCAGTCGTTTAACCTTTACGCAAGAGCCGTGGGCAAACAGCGCGGTGGAAATGCGAACGTGAAGTATGCTTGGTACGGAACTTCTGGTGAGCAAGAGATAAGGAATATCCTTTCACACGGTTTTAGTCATGTCCATGGTCATAACCTATGCCTCTCTCCAGATGATTCTCCTCTCGAAAGTTTGAAAAGCTGTGTTGTTGGCAGAGATGGTTTGAGGCACTTGTTACTGTGCCGCCTTATTTTAGGGAGAACAGAACTTGTGCAACCTGGCACACAGCAATGCTATCCGAGTTCTGAAGAATATGATTCTGGAGTGGATAGTTTTTCAGCGCCAAACAAGTACTTAATTTGGAGTAACCGGACGAACACTCATGTTTGGCCTGCTTATGTTATAAGCTTCAGAGTTCCTTCCTTCAAAGGGATTGAGAAGAGTGAAGAAGAGCCTTTGAGACCTTCTTCTCCTTGGTTACCTTTTCCGACTCTTATTTCTGCGCTTTCAAAGGTTCTGTCTGCATCTGATATTGCCTTGATCTCCAAGCTGTACAAAGCTAAAAAAGAGAGTAAAATTTCACGACATGACCTGATACAAAAAGTGAGACAAATAGCAGGAGACAAGTTGCTCATTGCAGTTATCAAGTCTTACAGAGCTAAGGTACAATTCGTCTCTTGTTTTTCTGATGATTTTGATTAG 993 0.4502 MKLTLPQNGFEQQEQEMCEHVSSNEDDSVVSDCESGVSGTKKVVQRHTPPGSFLVRLGEGDAVHDLIKRRFIQGLGFLGTKTDVIAIHRNACSSVVSQAKLQSFNLYARAVGKQRGGNANVKYAWYGTSGEQEIRNILSHGFSHVHGHNLCLSPDDSPLESLKSCVVGRDGLRHLLLCRLILGRTELVQPGTQQCYPSSEEYDSGVDSFSAPNKYLIWSNRTNTHVWPAYVISFRVPSFKGIEKSEEEPLRPSSPWLPFPTLISALSKVLSASDIALISKLYKAKKESKISRHDLIQKVRQIAGDKLLIAVIKSYRAKVQFVSCFSDDFD. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03077 330 SUPERFAMILY ADP-ribosylation 54 235 - -
Seca4g03077 330 ProSiteProfiles PARP catalytic domain profile. 37 254 IPR012317 GO:0003950
Seca4g03077 330 Gene3D - 53 236 - -
Seca4g03077 330 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 16 317 IPR044964 -
Seca4g03077 330 ProSiteProfiles RST domain profile. 250 321 IPR022003 -
Seca4g03077 330 Pfam RCD1-SRO-TAF4 (RST) plant domain 251 316 IPR022003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03077 Seca-Chr4 52809686 52812104 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03077 - - pvu:PHAVU_009G178500g 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03077 4 52809686 52812104 Seca4g03077 4 52809686 52812104 ECH
Seca12g01548 12 16340345 16343583 Seca4g03077 4 52809686 52812104 PCT